Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386543
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Entry
139386543 CDS
T10872
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139386543
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139386543
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139386543
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139386543
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139386543
Membrane trafficking [BR:
ocla04131
]
Autophagy
Autophagosome formation proteins
ULK complex
139386543
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
139386543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ubiquitin
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
139386543
NCBI-ProteinID:
XP_070988279
LinkDB
All DBs
Position
28:complement(28834080..28855941)
Genome browser
AA seq
1642 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYMNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRECLEKSCSTPAKDSDETEEEKSTDSV
LCPTPTETQRSSTKLPMSVCAPGAGVSPDTAQAQEGSEMTDSSGLRAALQEADSPERANP
PSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRDTIAKLDNQNMKA
IKGLEDRLYALDQMIASCNKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELME
RVRVVDALSTVPQMYCLAVVEVVRRKIFIGHYREWSCALVKDGKRLYETEKYKRETFGKL
FRKSFLRNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRLP
TLCDFEPLHQHVEMLQQLVLATQAASVDEMSRTITDLLSEQRVSCSQSAQRSTAAVTPLT
TRSNSTPGTTFTSSMTPSSLSLPGPLCQPLPGHGPTTLEDLSPDSIDAQTFDFETIGHPN
MDPVLQQAGSLDLDSLAESPESDFMSAVNEFVIENSPTPISDPTSPGMMVESLYSSVINA
IDSKRMHDTTTLERENSKMAALKLSMEKYRTAAEESQTNLRSVKDDLYRHRDLLLKEQRD
FGFALKTMTIEVRNMVDTIRKREEEEHQAELLSLQQDHENQLQALMEENQVNKNIVKDVQ
RTMLELEGLLEHKKKELTQLEVEREDWAEAQNGHTQKARVLEQKISDQAQEVQTLAASRD
SLASQLETLHIEIERGQQKIRQELEGAQQSHLQELEERMRHQHQAQLDTLARENQEALEH
LATENRAKLSEVTDLHTATLTERDCQLRDLEARVIELADLRCKLEVELALKESETEEVRL
LYEEAKQGQQEANVGKATVEAETQSLSEQLAKVNRQLQAKNEEYETDLAELRRLMEKDQC
ISELVDRHEEERNQLHRELTALQQQTLDAEKSRVEQLQNLQRDLDLQTVALCEDKEKQRG
SSEEQEQHLRTVICDLQVENDLLAKRIEQDTQTAQERLEKEKALKAAVPDDLKDLKQQKV
EMEKRLSDKIRQLECDLQERQSSEREAGLSEVQAEGRGSDAGAPLSLDSALQEHLQQETA
SLHTQLELLERRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEKLRKVTQQ
QEKDKGLIETLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNLLALEPTGAGPGPG
HCPGPGTEVEFGAGACYSEPFLDTDRPASVAAIREDDKVDSAVEASMVTVHDNILMMSEE
KQRILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERH
DNYVLFTVGPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQN
RFKVPLGTKFYRVKAVSWNKKV
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtattccaggtcaacaatggaagcactctgacatttgacacagaactt
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaagtacaagattgcaacc
cagcatcaagtcctggttgtgaatggaggggagtgtatggttgcagagaggcgtgtctgc
agctacagtgctggcacggacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgactatcccgaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagttgccaagaaactttgctctttctgcgaacgcctggtt
catgatgaacacctccaacaccaaggctgggctgccatcatggccaacctggatgactgc
acgctgtcctatcagaagctactgtggaaatttgacacggcatacatgaattatcaacaa
gactttgaggatatcaaattgaaactgacaaaactggggacagcagtctcagtcatggcc
aagatccccctactggagtgtctgacccgccacagctacagggaatgtctagagaagtcc
tgctccactcctgccaaggactccgatgagaccgaggaggagaagtctactgactctgtg
ctctgccccacccccaccgaaacacaaaggagctccaccaagttacctatgtcagtctgt
gctccgggggcgggggtctcacccgacaccgcccaagcccaggaaggcagtgagatgact
gacagtagtgggctgagggcagctcttcaggaggcagactctccagagagggccaatccc
ccgtccttcaacgtcacactgctggactggatcaacgttcaagaccggcccaatgatgtg
gaatcagttgtgaggaaatgctttgactccatcaataggctcgacccacggatcattcaa
ccattcttgtcggaatgtcgagacacgatagccaaactggataatcagaacatgaaagcc
atcaaagggcttgaagacaggttatacgctctagaccaaatgatagcaagctgtaacaag
ttggtgaatgaacagaaggaacttgctcagggatttctggccaatcagaagcgtgctgag
aacctgaaggatacgtccgtgctgcctgacctgtgtcttagtcacgccaaccagctgatg
atcatgctgaccaaccaccggaagctgctggacatcaaacagaagtgcaccactgccaaa
caggaactggcgaacaacctacaagttcgactcaaatggtgctgctatgtgatgctgcac
gcggatcaggacggagagaagctgcaggccttgctgaggctgctgacagagctgatggag
agggtccgggtggtggacgccctcagcaccgtgcctcagatgtactgcctggccgtggtg
gaggtggtccgccggaagatcttcataggtcactacagagagtggtcctgtgctctcgtg
aaggatggaaaacgtctctatgagactgagaagtataaaagggaaacgtttggcaagttg
ttcaggaaatcttttctcagaaatcgcttgtttagaggacttgactcatggccccccact
tcattttgcacgcgaaagcccagaaagtttgactttgagcttccagatatttcccttggt
gacctgcagtacttaaagacctgttgtcctacagaggtgcagcctttcctcaggcttcca
acactgtgtgactttgagcctttgcaccagcacgtggagatgcttcaacagttggtgcta
gctactcaagctgccagtgtggacgagatgtctcgaactatcactgacttactgagcgaa
caaagggtgtcgtgcagccagagtgctcagagatccacggcagcggtgaccccgttaacc
acgcggtccaacagcaccccggggaccacctttacctcctccatgaccccatcctctctc
agtctcccgggcccactctgccagcccctccctggccacggccccaccacgctggaggac
ctgtccccagacagcatcgacgcccaaaccttcgactttgagaccattggccaccccaac
atggaccctgtcctgcagcaggccggttccctggacctggactccctggctgagagcccc
gagtcagacttcatgtcggcggtcaacgagtttgtgatcgaaaactcgcccacccccatc
agcgaccccaccagcccagggatgatggtggagtcgctgtactcttcggtcatcaacgcc
atcgacagcaagcgcatgcatgacaccaccactttagagagggagaactccaagatggcc
gcgctaaagctgagcatggagaagtaccgcactgctgccgaggagtcccagaccaacctg
cggagcgtcaaggatgacctgtaccgccacagagacctgctgctgaaggagcagcgagac
tttggcttcgccctgaagaccatgaccattgaggtgcgcaacatggtggacaccatccgt
aagagagaggaggaggagcaccaggccgagctcctctccctgcagcaggaccacgagaat
cagcttcaggccctgatggaagagaaccaggtcaacaagaacattgtgaaagacgtgcag
cggaccatgctggaactggaggggctgctggagcacaagaagaaggagctcacccagctg
gaggtcgagagagaggactgggccgaggcacagaacggacacactcaaaaggccagggtc
ctggagcagaagatcagcgatcaggcccaagaggtgcagaccctggctgcctccagagac
tccctggccagccagctggagacgctgcacattgagatcgagcgcggccagcagaagatc
cgccaggagctggagggggcccagcagtcccacctgcaggagctggaggagaggatgagg
catcagcaccaggcccagctagataccctggcccgggagaaccaggaggccctggagcat
ctggccacagagaacagggccaagctgagcgaggtcactgacctgcacaccgccaccctg
acagagagggactgccagctgagggacctggaggcccgggtcatcgagctggctgacctg
cgctgcaagctggaggtggagctggccctgaaggagtctgagacagaggaggtgaggctg
ctgtacgaggaggccaagcaggggcagcaggaggccaatgtggggaaggccaccgtggag
gctgagacccagtccctcagcgaacagctagccaaggttaacaggcagctgcaggccaag
aacgaggagtacgagaccgacctggctgagctgaggaggctgatggagaaggaccagtgt
atctctgagttggtggacaggcacgaagaggagaggaaccaactccacagagagctgacc
gccctgcagcagcagaccctggacgccgagaagagccgcgttgagcagctgcagaacctc
cagcgagacctcgacttgcagacagtggcactgtgcgaagataaggagaagcagcggggg
agttctgaggagcaggaacaacacttaaggactgttatctgcgatttgcaggtggagaac
gacctgctcgccaaaagaatagagcaggacacacaaacagcccaggaacgtttggagaaa
gagaaggccttgaaggctgctgtaccagatgaccttaaagacttaaagcaacagaaggtg
gagatggagaaaagactgtcagacaaaattagacaacttgaatgtgaccttcaggaaaga
caatcctctgaaagagaggcagggttgtcggaggtacaggcagagggtcgggggtctgat
gcaggggctcctctctccctggactctgcattgcaggagcatctgcagcaggagacagcc
tcgctgcacacccagctggagctcctggagaggaggaagaacgaggagatgcagaacctc
aagacctccctcattgcagaacaacagactaacttcaacactgtgctgacgagagagaag
ctgaaaaaggaacagatcatcaatgatctgacagagaagctgcggaaggttacccagcaa
caggagaaggacaaaggtctaatagagacactgtctgaagaccgggccatcgtcatgcag
gagaagaagcagttggaggaggacctgaaccggctgcgcagcaccgccctggtgtcctcg
gcctactacagccctaacctcttagctctggagcccactggagccgggcctggacctggg
cattgtcctggtcctgggactgaagttgagtttggggctggagcctgctactcggagccc
ttccttgacaccgacagacctgcctctgtggccgccatcagagaggacgacaaggtggac
tcagctgtggaggccagtatggtgaccgtacacgataacatcctgatgatgtccgaggag
aaacagcggatactgttacttgagaggactttacatatgaaggaagaggaaaacaagcgc
ctcagtcaaagactgatgtctcaaagcatgtcctcggtgtcgtcacggcattcagagaaa
atcgccatcagagatttccaggttggtgacttggttctgatcatcctagatgaaaggcat
gacaactatgtactgttcaccgtgggtcccaccctgtacttcctccactctgagtccctc
acggccctggacctcaaaccagatcctatgtttacttcagcatcgggagcctcaagacgg
ccgtgggttcttggaaaagtgatggagaaggaatattgccaggcgaaaaaggctcaaaac
cggttcaaagttcctttgggcaccaagttctacagggtgaaagctgtttcatggaacaag
aaagtataa
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integrated database retrieval system
