Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386591
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Entry
139386591 CDS
T10872
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139386591
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
139386591
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Meiosis-specific proteins
Others
139386591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
139386591
NCBI-ProteinID:
XP_070988371
LinkDB
All DBs
Position
28:10756847..10776987
Genome browser
AA seq
1040 aa
AA seq
DB search
MLDSEDCTLSLDNLFFERPVVHKVKPLCQEQSSWQLEPPLSLSQIPDTQDIQKKAEDLSS
FSFSQKSNKFLPPLKRAADGDGFTPKNNKLNQNTSDGRKEPEAQGGCALWSREDFMNKSQ
DTTKVRGRTKTPHESGHALEQKHFPLEFSQSPPLRRSLFKPPSGQVLNSSANSIRGLNQA
RPRVQQTFDQVSMATEPRLAKQLAAGSGPLTDLGPPTALGPPQKTQDKGTKRAHVLPMTP
QPLHIQSTSGPGILRPISEIPAKFRSVFKEFPYFNYVQSKALDDVLYTGKNFVACAPTGS
GKTVLFELAIIRLLMETTEPWRNVKAVYMAPIKALCSQRFEDWKNKFGPLGLSCKELTGD
TEIDDFFEIQDANIIMTTPEKWDSMTRKWRDNCLLQLVRLFLIDEVHVVKDPMRGATLEV
VVSRMKAVHAYRAAENPQEDVSMRFVAVSATIPNTKDIADWLCDDRDPATCLEMDESHRP
VKLRKVVLGFPCNSNQTEFKFDLSLNYKMANIIQTYSDQKPTLVFCSTRKGVQQSATVLA
KDARFIMSIEHKQRLVNYANSLLDSKLRDLVLFGVGFHHAGVDVSDRKRIEEAFNMGDLP
VLFTTSTLAMGVNLPAHLVVIKSTTHYIGGACEEYSEADMLQMIGRAGRPQFDTSATAVI
MTKTQTKDKYMQFMNGAEIIESSLHTHLVEHLNAEIVLHTISDVNMALDWIRSSFLYIRA
LKNPRHYGFSTDLDRCGIEAKLQELCLKNLNSLASIGLISMDEDVNIKATEAGRLMARYC
VAFDTMKQFSKVTGTETLPELIELMVKGREFTDVQLRVNEKRTLNTLNKDKNRITIRYPM
EGKIKNKEMKVNCLIQAQFGSIPIQEFGLAQDTGRIFRNGVRISRCLAEFLNQRSKTGFS
ALLNSLILAKCFRAKLWEDSPYVSKQLEKIGLSLSTAMVNAGLTTFNKIEQTNARELELI
VNRHPPFGNQIRDAVINLPKYEVSLEQLPRYNIATAEIVVTVNVKNHEQLLSKRTTHDHH
YVTMIIGDCDNNVVFLQKLT
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgttggactcagaagactgcactttgtccctggataacctcttctttgagaggccagtt
gtccacaaagtaaagccactttgtcaagagcagagttcttggcagttggaaccccctctg
tccctctcccagatcccagacactcaggacatccagaaaaaggcagaggatctttcatca
ttcagtttctctcagaagtccaacaaattccttccccctttgaaaagagcagctgacggt
gatggtttcactcccaagaacaacaaattaaatcagaataccagtgatggaagaaaagaa
cctgaggcacagggcgggtgtgccctttggtctcgggaagacttcatgaataaatcccag
gataccacaaaggttagaggtcgaactaaaaccccacatgagtctggtcatgcactggag
cagaaacatttccctttggagttcagccaaagcccacctctacggagaagtttgttcaaa
cctcccagtggtcaggtgttgaacagcagtgcaaactcaatcagaggcctcaaccaggca
cgacccagagtgcagcaaaccttcgaccaggtttctatggcgacagagcctcggctggca
aagcagttggcagcaggctccggccccctcaccgatctgggcccgcctacagccctggga
ccaccacagaagacacaggacaagggcaccaagagggctcatgttctccccatgacaccc
caaccccttcacatacaaagtacttctgggcctgggatactccgaccaatctctgaaatc
cctgctaaatttagatcggtcttcaaagagttcccttacttcaactacgttcaatcaaaa
gccctagatgacgttctatacacgggtaagaactttgtggcttgtgctcctacgggctct
ggtaagactgtgcttttcgagttggccatcatccgcctactgatggagaccacagagccc
tggagaaacgtcaaagctgtgtacatggcccccatcaaagctctatgcagccagcgcttt
gaggactggaagaacaaatttgggcctctgggcctgagctgcaaggagctgactggagac
acagagatcgatgacttctttgagattcaagacgccaatatcatcatgaccacacctgaa
aaatgggacagcatgacgaggaagtggagggataactgcctgctgcagttggtccggctt
ttccttattgatgaggtgcacgtggtgaaggaccctatgcgcggagccacactagaggtg
gtggtgagcaggatgaaggcggtccatgcctaccgtgcagcagagaaccctcaggaggat
gtatccatgagatttgtggccgtctccgccaccatccccaataccaaagatatagcagac
tggctgtgtgacgacagagaccctgctacttgtctggagatggatgagagtcacagaccg
gtgaaactgaggaaagtagtgctgggtttcccctgcaacagcaaccagactgagttcaag
tttgacctgtcactcaactacaagatggccaacatcatccagacctactcggaccagaaa
ccaacacttgttttttgttcaacaaggaaaggagtccagcagtcggccactgttctggcc
aaggatgccaggttcatcatgagtattgagcacaaacaaaggttggtgaattatgcaaac
tctctcctggactcaaaactcagagacttggtgttgtttggagttggtttccaccacgcc
ggagttgacgtgtcagacaggaagcgaatcgaggaggccttcaacatgggagacctgcct
gtgctgtttacaactagtactctggcgatgggggtgaacctgccagcccacctggtggta
atcaagtccaccacgcactacatcgggggcgcctgtgaggagtacagcgaggccgacatg
ctgcagatgattggccgagcaggccggccacagtttgatacatcagcgaccgcagtgatc
atgaccaagactcaaaccaaagacaagtacatgcagttcatgaatggagcggaaatcatc
gaaagcagcctgcatacccacctggtggagcacctgaacgctgagattgtcctccacacc
atttcagacgtcaacatggccctggactggatccgctccagcttcctctacatccgagct
ctgaagaaccccagacactatggcttttccactgacttggaccgatgtggaatcgaagcc
aaattgcaagagctctgtctgaagaacttgaattccctggcctccattggtctgatctcc
atggatgaggatgttaacatcaaagctacagaggcaggcaggctgatggcaaggtactgt
gttgcgtttgacaccatgaagcagttcagcaaggtgacaggcactgagaccttacctgag
ctgatagaattgatggtgaagggcagagagttcactgacgtgcagctgagagtgaacgag
aagagaaccctgaacacgttgaacaaggacaagaacaggatcactatcaggtatcccatg
gagggaaagatcaaaaacaaagagatgaaggtgaactgtttgattcaagcccagtttggc
tccattccaatccaagagtttggacttgcacaggacacagggagaatcttcagaaatgga
gtccgaatcagcagatgcttggcagagttcctgaaccagcgctccaagacaggcttctct
gctctactcaactccctgatactggccaagtgcttcagggccaagctgtgggaggactct
ccttacgtctcaaagcagctggagaaaatagggttgtctctgtcgacggccatggtgaac
gctgggctcaccaccttcaacaagatagagcagaccaacgccagggaactggagctgatt
gtcaacagacatcctccgtttggaaaccaaatcagagacgctgtcatcaatctacccaag
tatgaagttagtttggagcagcttccaagatacaacatcgccaccgcagagattgtcgtg
accgtgaatgtgaaaaaccacgaacagctactgtcaaagagaaccactcatgaccaccac
tatgtcacaatgatcatcggggactgtgacaacaacgtggtcttcctgcaaaaactcacg
taa
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