Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386620
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Entry
139386620 CDS
T10872
Name
(RefSeq) collagen alpha-2(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139386620
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139386620
09142 Cell motility
04820 Cytoskeleton in muscle cells
139386620
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139386620
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139386620
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139386620
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139386620
Hyaluronan
Extracellular matrix or blood plasma proteins
139386620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
139386620
NCBI-ProteinID:
XP_070988451
LinkDB
All DBs
Position
3:complement(4167591..4187342)
Genome browser
AA seq
1011 aa
AA seq
DB search
MAGVLKAVLLLWVLQVSAQDPEYLLVRPRNINDEKDDCPINVYFTMDTSESVALREFPWG
SLVEELKEFLQMFVKRLQTTPLRAKRAQWAYGGLHFSDRVEVFSQVVTDAADFLGSVQAI
RYIGRGTFIDCALRNMTEQVRLTASGKPRLQYAVVLTDGHITGSPCGGVSRAAEAAKAAG
IKIFVVATNEYTMESELKRIASSPVELYRKDYMAFPASNRQAAVNRITDTMIKEAEFECQ
APMCIQTKGAVGPKGYKGMKGAKGTNGAIGDPGQPGQQGDLGIEGSIGLHGQKGLPGLKG
EKGDIGGSGPKGQRGSPGYNGIDGEKGKTGTTGTPGCKGDAGMSGEAGLAGDFGIKGDTG
KSGEKGVAGQSGRPGPQGDHGDSGDKGVAGYIGNPGLPGQKGNKGKAGPGGSPGDTGSRG
DSGRAGRRGKAGKRGDKGELGPEGVRGVPGENGEEGAAGAPGFPGVRGPPGEGGEAGLQG
SQGDAGDFGPRGNTGAAGAKGDRGSDGYNYPGPRGNQGGRGDPGLPGLQGTRGYNGEKGA
QGTTGTKGLAGEPGQEGVPGDRGVRGSPGPLGVPGTRGASGLSECEIMGFVRETCGCCDC
EKVCPPLDLVFVIDSSESIGKTNFSLAKNFVISVANRLGKMAKNISDVSGSRLGVVQYSH
QGAVQAIRMDDRGITSVTSFNTKVKAMEWIAGGTWTPSALKYTYDHLIVPGRRGRTKVVA
IVITDGRYDPKDLDNLGALCNGVDVYAIAIGDMFDSGAERQNLEMIACNMGDRVKTLSVY
ADLTAEEFLEEIEQILCPEPEMICPDLKCASDLSLAPLIQRPVDILFFIDGSERTGGRNF
ISILRFIGRLSQSIPLSKEVSLGARFAVLQFGGEQDPEVLLDFSNNHRKISSLVSNAVYR
DLSSTLGSAILYATENLVSNPGGRFRGVRPDAELTFVFITDGVTSDKNFAEGIRAMRRAN
AVGVAITVGSDIDRERLLQLTLRDKALIFNLMSFNDLALPGVVKHMAHCLG
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagtactgaaggctgtcctgttgctgtgggtcctccaggtctctgcccaggac
ccagaatacctgttagtgaggcccaggaacatcaatgacgaaaaggacgactgccccatc
aacgtgtacttcaccatggacacctctgagagtgttgctctgagggagttcccctggggc
agtctggtggaggagctcaaggagttcctccagatgtttgtgaagaggctccagaccacc
cccctcagggccaagagggcccagtgggcctacggtgggctgcacttctcagaccgtgtg
gaagtcttcagccaggtggtcactgatgctgcagatttcctgggaagtgtacaggccatc
aggtacattggtaggggaaccttcatcgactgcgccctgaggaacatgacagaacaagtg
aggctaacggccagcggaaagccccggctccagtacgctgtggtcctgactgacggccac
atcactggcagcccctgtggaggggtctcacgggccgccgaggctgccaaggcagcgggc
atcaagatctttgtagtggccaccaacgaatacaccatggagagtgagctcaagcggatc
gccagttctcctgtggagctgtataggaaagactacatggcattcccagctagcaaccgc
caggcagctgtcaacaggataactgacaccatgatcaaagaggccgaatttgagtgccaa
gccccgatgtgcatccaaacaaaaggagctgtcgggccaaaaggatacaagggaatgaaa
ggtgcgaagggaactaatggtgcaataggagatcctggacagcctgggcaacagggagac
cttggtatcgagggctcgataggtttgcatggacagaagggtcttccaggcctcaaagga
gagaagggagatattggtggatctggtccgaagggtcaaagaggatctcctgggtataac
ggcattgatggcgaaaagggaaagactggcaccactgggacacctggatgtaaaggagac
gctggcatgtcgggagaagccggtcttgccggggactttggtatcaagggtgacacgggc
aagtcaggtgaaaagggtgttgctgggcagagtggcaggcctggaccacagggtgatcat
ggagacagtggagataagggtgttgctggctatattggaaaccctggtctgcctgggcaa
aaaggaaacaagggtaaagctggacctggtggaagtcctggcgacactggaagcagagga
gacagtggcagagctggacgacggggcaaggctggcaagagaggagataagggagaacta
ggcccagagggggtgagaggagttcctggagagaatggagaagaaggagcagcaggggca
ccaggtttcccaggggtccgtggtccaccaggtgagggtggagaggcgggacttcagggc
tctcagggggatgcaggggactttggcccccgaggaaacactggagcagcaggagccaag
ggagatagaggaagtgatggatacaactacccaggacccagagggaaccagggagggaga
ggagaccctggtttacctggactgcagggcaccagaggttataatggagagaaaggagcc
cagggaactacaggaacaaaaggattggcaggggagccagggcaagagggtgttcctggg
gacagaggagtgagggggtcacctggaccactgggagtacctggtactcgtggggcctct
ggtctatcggagtgtgaaatcatgggatttgtcagagaaacatgtggctgctgtgattgt
gaaaaggtttgccctcccctggacctggtgtttgtgattgacagctctgaaagtattgga
aaaaccaactttagcctggctaaaaactttgtcatcagtgtagcaaacaggcttgggaag
atggccaaaaacatatctgacgtctcagggtctcgtctgggtgtggttcagtacagtcac
caaggggcggttcaggccatcaggatggacgataggggcatcacctctgtgacctccttc
aacacaaaggtcaaagccatggagtggatcgctggaggcacctggactccctctgccctg
aagtacacatacgaccatctgatagttccaggtcgcagggggaggaccaaggtggtggcc
atagttatcacagacggtcgctacgatcctaaagacctggataatcttggagccctgtgt
aacggagtggacgtgtatgccatcgccatcggtgatatgtttgactctggggcagagagg
cagaatctggagatgattgcctgtaatatgggcgaccgggtgaagacccttagtgtctac
gctgatcttactgctgaggaattcttagaggaaatagaacaaatcctctgcccagaacca
gagatgatctgtccagacctgaagtgtgcctcggatttgagtttggctccactgatccag
cgccccgtagacatcctcttcttcattgacggttctgagagaacagggggcagaaacttc
atcagcatcctgcgcttcatcgggagactctcccaatcgatccctctctccaaggaggtc
tctttaggagctcgcttcgccgtgctgcagtttggaggggagcaggacccagaggttctt
ctggacttctccaacaaccacagaaagattagctccctggtctctaatgcagtctaccga
gacttatcctccactctgggcagcgctattctctacgcaactgagaaccttgtcagtaac
cctggaggtcggttcagaggggtacgtccagacgcagagctcacctttgtgttcattaca
gacggagtgacctcagacaagaactttgctgagggtattagagccatgagaagggccaac
gcagtgggtgttgctatcacagtgggatcagatattgacagggagcggttgctgcaactc
actcttagggacaaagctcttatctttaacctgatgagtttcaatgacttggccctccct
ggggttgttaaacacatggctcattgccttggttaa
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