Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386699
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Entry
139386699 CDS
T10872
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145
Phagosome
ocla04814
Motor proteins
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139386699
09142 Cell motility
04814 Motor proteins
139386699
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139386699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139386699
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139386699
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
139386699
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
139386699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
WD40
Dynein_IC2
WD40_Prp19
Beta-prop_WDR5
Beta-prop_EML
Beta-prop_WDR3_1st
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR3_2nd
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
139386699
NCBI-ProteinID:
XP_070988625
LinkDB
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Position
3:4347866..4373649
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AA seq
630 aa
AA seq
DB search
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKESESLQQKTENVSEDSDLDRKRRET
EALLQSIGISPEPPLVPTPMSPSSQSVSTTSDAGSQESVDGGTVGRTLQWDTDPSALQLQ
ADSELGRRMHRLGASKIVQIDFVPKELVTYTKETQTPSAAHQSEEEEEDEESSEPKASPQ
TDQPEEEGEAEDSKEAHPRELTEEEREQILHSEDFLVFFERSVSVVERALAEEGDIFFDY
SGRDLEDKEGDMQGGSNLSFNRVFHDDHWSKHRVVTCLDWSPQYPELMVASYNSNEDAPH
EPDGIALVWNMKFKKTTPEYTFHCQSSVMSVGFAQFHPNLVVGGTYSGQIVLWDNRSHRR
TPVQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTDGKMCSWSLDMLSQPQESMELVYN
KSKPVAVTGMAFPAGDVNNYVVGSEEGMVYSASRHGSKAGIAEMFEGHQGPVTGISCHNA
VGTVDFSHLFITSSFDWTVKLWSIKHNKPLYSFEDNADYVYDVSWSPVHPALFASVDGMG
RLDLWNLNNDTEVPTASVTIEGACALNRVRWASGGREVAVGDSEGRVWIYDVGELAVPHP
EDWSHFARTLVEIRANRGDGEEEGAVELPA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaaaagtgacctgaaagctgagctggagcgaaagaaacagaggctagctcaa
atacgagaggagaagaagagaaaggaggaggagaggaaaaagaaagagtctgagagtctg
cagcagaaaacagagaatgtctctgaagattctgacttggaccgcaaacgaagagagacg
gaggcgctgctgcagagtattgggatctcaccagaaccaccattagtcccaacccctatg
tctccctcttcacaatcagtgagcaccaccagtgatgctggcagccaggagtccgtagat
ggggggacagtgggacggaccctgcagtgggacacggacccctctgctctccaactgcag
gcagactctgagctggggcgcaggatgcacagacttggagcgtcaaaaatagtacagatt
gacttcgttcccaaagagcttgtgacctacactaaagagacccagactccttcagcagca
catcaatctgaagaagaagaagaggatgaggagagcagtgagcctaaagcttcccctcag
actgaccagccggaggaggaaggagaggcagaggacagtaaagaggcccatcccagagag
ctgacagaggaggagagggaacagattctccactcagaggacttcctggtgttctttgag
cggtcggtctctgtggtggagcgggcgctggccgaggagggagacatcttctttgactac
agcggccgggacctggaggacaaagaaggggacatgcaaggtggatccaatctgtctttc
aaccgtgtgttccatgacgatcactggtccaaacaccgagtagtcacctgcttagactgg
tctccacagtaccctgaactgatggtggcctcttacaacagcaacgaggatgctccacac
gagcctgatgggatagcgctggtgtggaacatgaagttcaagaagaccactccagagtat
acatttcactgccagtcgtcagtgatgtctgtgggctttgctcagttccatcctaacctg
gtggtggggggaacgtactcagggcagattgtgttgtgggataaccgtagtcacaggagg
acccccgtccagaggacccctctgtctgctgcggcacatactcacccagtgtactgtgtg
aacgtggtgggtacccagaacgccaacaacctgataacagtgtctactgatgggaagatg
tgctcctggagtctagacatgctctctcagcctcaggagagtatggagctggtctacaat
aagtccaagcccgtagcagtaacaggaatggccttccctgccggagatgttaacaactac
gtggtgggaagcgaggaagggatggtgtactctgcgtcccgccacggcagtaaagcaggt
atagctgagatgtttgaggggcaccagggcccagtgactgggatcagctgccataacgct
gtgggcactgtggacttctcacacctcttcatcacgtcctcctttgactggactgtaaaa
ctgtggtccatcaagcacaacaagccattgtactcctttgaggataatgcagactatgtc
tatgatgtcagttggtcccctgtgcatccggctctctttgcctccgtggatgggatgggt
cgtttggacctgtggaacctcaacaatgacactgaggtgcccacggcgagtgtgacgatc
gagggggcgtgtgctctgaaccgtgtgagatgggcgtcgggaggcagagaggttgccgtg
ggtgactcggagggccgtgtctggatctacgatgtgggagagctggcagtgccacaccct
gaggactggagccacttcgcccgcaccctagttgagatccgtgccaaccgcggggatgga
gaggaggagggggccgtggagctgccagcctga
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