Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386704
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Entry
139386704 CDS
T10872
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8-like isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
139386704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139386704
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139386704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HDA2-3
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
139386704
NCBI-ProteinID:
XP_070988631
LinkDB
All DBs
Position
28:complement(32633053..32659536)
Genome browser
AA seq
2601 aa
AA seq
DB search
MADPIMDLFDDTPLFNLDALPDDAFTDPVEEALKLALGHVDPPSEPTPDLSTPALSIPVA
APTISDPVPVQQPAPVPVALPQTVSIATTVPQTTLSVASNTSGAATVLLSSPLTVNSSTG
TTQQFTTQQLTQIAQQLTPQQLAAITQQAGGQGGAKIVILKGPGGQAQLLQTVAGTGSQA
GKVTFARVLSGTQLRPGMQILSGGAVLNQASPGQGQVKVGTGVQRLVQSPNGPLKQVQLI
SIPQGQSQSQTQTVQVQIPQAQLAQAQAQVQLQTQGQATQIQLQPQTQVQLQSAMQTQVT
AAATGTTTVRPQGVTLTTVPQQGEAKRITLVLQQPQGGAAQGGAVTVGGSGQLQQGQQQR
LVLGNLPGKLVLQGGQLAALTQARAGQTGTQPKVLTIQLQVQQQPNQQGGPKFQLVSGGQ
GSSPQVVQISQGQGGQRLAVPLKLLLQPQTNATSTAGRAVSVVKVINTSAAGSAPSTTTT
MSSPGIRLAKAQEPVRRLETLCKQEKANRIVAEAIARAKARGERNIPRVLNQDELPAGQK
AADQGAAATTTGTPGAKKKGGGSKKKSPAAAAGKGGAGAEKKGKAKAAGGAAGGTPGGAA
GTGCSKSKSKAKINTITLVGGKKRKRNASSDHSDGELSPASPSKALDEDMLAKRRSNRQV
KRKKYTEDLDIKITDDEDEPEEDVDVTTTTAAVASITGGATGQLMGEQLKQELQLDGDSL
SSMQFFVENPNEEDAAIVDKVLSMRLTKKEVSPGHYINAEEFFVKYKNYSYMHCEWATLE
QLERDKRIHQKLKRFKAKHAQMRHLLQEEEEPFNPDYVEVDRILDESNSVDNGEPVVYYL
VKWCSLPYEDATWELREDVDEGKVEEFRKIQDRQPQLKRTPRPQAAAWKKLEEFREYKSG
NVLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSISLLSEVFGAGVQGPFLVIAPL
STITNWEREFATWTDMNAIVYHGSLASRQMIQQYEMYCKDDKDHLIPGAYKFDALITTFE
MILSDCPELREISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELF
SLLHFLEPAQFSSESEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETI
IEVELTDVQKKYYRAILERNFSFLSMGATSNSNVPNLLNTMMELRKCCNHPYLITGAEEK
IVAELRDVYNPVAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILED
YLINKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIF
DSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSG
NKESNVNGQIQQFSKKEIEDLLRKGAYAAIMDEEDEGSKFCEEDIDQILQRRATTITIES
EGKGSTFSKASFVATENRTDIALDDPEFWQKWAKRADIDFDSMNRKNTLVIDTPRVRKQT
RQFATLRGEGGEISDPDSDDEYPPANSRQSRSSRRSERHTGNGYGRTDCFRVEKHLLVYG
WGRWRDILSHARCKRRLGERDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGREP
HTLLNHSGLSIPVPRGRKGKRVKAQSSFDVQKVEWIRKYNPDSLLLDDSYRKHLKHQCNK
VLLRVRMLYYLRQEVIGEHADSVLRGADARDIDIWMPEMEQLEVPSGWWDTEADRSLLVG
VFKHGYEMYTTMRADDCLCFLERAGRPDDQAIDAEQHSADAELGDGGDDDKYSEDPEFKP
ALRHTKDLYEEADSLNMDDDICVEDKALPVKTKGPPSGQSGACEWPTSSSLTARLRRLIT
AYQRSYRREQLKVEAAEKGDRRRRRCEQASKLKEIARQERQQRYQLLPSTINSASICVLK
LRWTRREECDFYRVVSTFGVERIKKEADTPEGEEAELEWARFRTFARLEKKTDESLSRYF
RCFMAMCRRVCNLRPASGEDPSELGQSLAPITEERASRTLYRISLLRRLREHVLPHPSLE
ELLLLAPPSSELPAWWSTPAHDRELMLGSALHGVSRTELSVFLDPQFSFSQARHDYLENQ
QNQPAPANPLLQPQAEEGSVVKEEEGLDKESRILGASEALGHSDTQITHLSRPDGKGRAR
TGLGWKKSRGRGPRSGGNKGERSVGGISDSGSDSDSGSSTSSQRSGSSDDSGDSETERER
AALKMEEDGENSLLSMTPSQDGAPPESLTDPFRVDWPKDRVLINRLDSLCTLVLSGQWPT
GRRYASDAQLNPGSDDLGAGDELSFARLMRKGNSTPGGEGADGQESEFTVKLLKEEGLKL
TFSKHALMSNGSGGEGSGRRKHRDQELSDPDGAVPVVDAMTGTVLSGERAPRRRDLPNWL
KENPDYEVEGDMLELLVNQKRRRRRKKRTEKTAALLGSEKVKIIDMRTGKKVGATYGPML
QDLRAFLEENPDCAVAPEWAEMVQSSGFLPDSLFHRLLSARSVIPKRVRRRHHHHHAPQP
APLEDPVLGGGVEETLVSDGAYMMEDEDLENSPFLTQAFDVKMEGGNSLSQGGYESSDRE
ALLDDVIMAQKDSDSSSSSED
NT seq
7806 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggacctctttgatgacacgccactgtttaacctggatgccctg
ccagacgatgccttcacagaccccgtggaggaggctctgaaactggctctggggcatgtg
gaccccccctctgaaccaaccccagacctctccaccccagcgctcagcataccagtggca
gctccaaccatctcagacccagtacctgtgcagcagccggccccagtcccggttgccctc
cctcagactgtttcaatagctacaacagtacctcagacaacactctctgtagccagtaac
accagtggggctgccacagtcctgctgagctcacctctgactgtcaatagctctactggc
accacacaacaattcaccacacagcagcttacacagattgcacagcagcttactcctcag
cagctagctgccatcacccagcaggccggaggccagggaggtgccaagatcgtcatcctg
aaaggacctggggggcaagcacagctgctgcagactgttgctgggacaggctcccaagcg
gggaaggtcacctttgccagggtactgtctggaacccaactcaggcccggcatgcagata
ctgtctggaggagcggtcctgaaccaagcgtctcctgggcagggacaggtgaaggtggga
actggggtacagaggctggttcagtcgcccaacggacccctgaagcaggtacagttgatc
tccattcctcagggccagtcccaaagtcagactcaaactgtccaggtgcagataccgcaa
gcccagcttgcccaagcccaggctcaagtgcagctccagacccaaggacaggcaacgcaa
atccagctacagccccagacacaggtgcagctgcagtctgccatgcagacacaggtcacc
gctgctgctacaggcaccactacagtccgaccacaaggggtcaccctcactacagtacca
caacagggtgaagccaagaggatcaccctggtgctgcagcagcctcagggtggtgcggcc
caggggggtgctgtgacagtcggtgggtcgggtcagctgcagcagggccagcagcagagg
ctggtgttgggtaatctcccagggaagctggtcctccaggggggtcagctggctgctctc
acccaggcaagggcagggcagacggggacacagcctaaagtgctcaccatccagctgcaa
gtgcagcagcaacccaaccaacaggggggacccaagtttcagctggtgtccggagggcaa
ggtagtagcccacaggttgttcagatctcccagggtcaaggtggacagagactagccgtg
cccctcaaactgctgctgcaaccacagacaaatgccacctcgacagcaggcagagctgtc
tccgtagtgaaggtcatcaacacctcagctgctggctccgccccttccaccaccaccact
atgtcgtcaccagggatacggctagccaaggcccaggagcctgtacgtcgtttggagacc
ctgtgcaagcaggagaaggccaaccgtattgtggctgaggccattgccagggccaaggcc
cggggagagaggaacattccacgagtcctcaaccaggacgaactgcctgccggacaaaag
gctgctgaccaaggggcagctgcaacgaccactggcacacctggagccaagaagaaggga
ggagggagtaagaagaagagcccagcggcggcagcagggaagggcggggctggtgcagaa
aagaagggcaaagccaaggcagcaggtggggctgctggtgggacacctggaggggcggct
ggtaccggctgcagcaagagcaaaagcaaggcaaagatcaatacaatcactctagtgggg
ggtaagaagaggaagaggaatgcctcctcagaccattctgatggggagttgagccccgcc
tctccctctaaggccctggatgaggacatgcttgcgaagagacgttctaaccgtcaggtg
aagaggaagaaatacactgaggatctggacatcaaaatcactgacgacgaggacgaaccg
gaggaggacgtggacgtaaccaccacgacggcggcggtggcgtccattaccggaggagca
acggggcagctgatgggagagcagctcaaacaggagctgcagttggatggggacagcctt
tccagcatgcagttctttgtggaaaaccccaacgaggaagatgcagcaattgttgacaaa
gttttgtccatgaggttaactaaaaaggaggtgtctccaggacattacatcaatgctgag
gaattttttgtcaaatataagaactactcctacatgcactgtgagtgggccactctggag
cagctggagagagacaagaggatccatcagaagctcaagagattcaaggccaaacatgca
cagatgagacacctcttacaggaggaagaggagccctttaacccagattatgtggaggtg
gaccggatcctggatgagtccaacagtgtggacaatggagagccggtggtgtattacctg
gtgaagtggtgttctctgccctatgaagatgctacctgggagctaagagaggatgtggac
gagggcaaggtggaggagttcaggaagatccaagaccgccaacctcaactcaagagaacg
ccccgaccccaagcagctgcatggaagaagctggaggaattcagagagtacaagagtggg
aacgtactccgagaataccagctagaaggagtcaactggctgctcttcaattggtacaac
agacagaactgtatcctggcagatgagatgggtctagggaagaccatccagtccatctct
ctgctgtccgaggtgtttggtgccggagtccagggccccttcctggtcatcgctcctctc
tctaccatcaccaactgggagagggagtttgccacctggactgacatgaacgccatcgtc
taccacggcagcctggccagcaggcagatgatccagcagtacgagatgtactgcaaggat
gacaaggatcatctgatcccaggggcgtataagtttgatgccttgatcaccacgtttgag
atgattctgtccgactgccctgagctgagggagatctcctggcgctgtgtgatcattgac
gaggctcaccgcctcaagaaccgcaactgcaagctgctggacagtctcaagatgctggac
ttggagcataaggtgcttctaactggtacccccctccagaacacagtggaggaactcttc
agtctgctgcacttcctggagccagctcagttttcatcagagtctgaattccttcgtgac
tttggagacctcaaaacggaggagcaggtccagaagctccaggccattctgaagcctatg
atgctgcgcagactcaaagaggacgtggagaagaacttggcgccaaaacaggagaccatc
attgaggtggagctgacagatgtgcagaagaaatactaccgagccatcctagagaggaac
ttcagtttcctcagcatgggagccaccagcaacagcaacgtgcccaatctgctcaacacc
atgatggagctacgcaagtgctgcaaccacccctaccttattactggggcagaggagaag
attgtggctgagctgagggatgtttacaaccccgtggccccagactttcacctacaggcg
ctggtgagatccgcaggcaagctggtcctgctggacaaactgctgcctcgcttgaaggcc
gggggacacaaggtgctcatcttctcccagatggtgcgctgcctggacatcctggaggac
tacctcatcaacaagagatacctgtacgagcgtattgatggcagagtgagagggaacctg
cgtcaggcagccattgaccgcttcagcaaaccagactcggaccgttttgtcttcctgttg
tgtacacgggctggaggtctgggcatcaacctgactgctgctgacacctgcgtcatcttt
gactccgactggaaccctcaaaacgacctgcaggctcaggcgcggtgtcaccgtatcggc
cagtccaaggcggtgaaggtgtaccgtctgatcaccaggaactcttatgagagggagatg
ctagacaaggccagcctcaaactgggtttggaccgggctgtactgcagagcatgagcggt
aacaaggagagcaatgtcaacggacaaatccagcagttctccaagaaggagatcgaggac
ctcctgaggaagggggcgtacgctgccattatggacgaggaggacgagggctccaagttc
tgtgaggaggacattgaccagattctccagaggagagccaccaccatcaccattgagagc
gagggcaaaggctccaccttctccaaggccagcttcgtggctaccgagaacaggaccgac
atcgccctggacgaccccgagttctggcagaagtgggccaagagggcagacatagacttt
gattccatgaataggaagaacaccctggtgattgacacgcccagggtgaggaagcagacc
cgtcagtttgccaccctgaggggcgagggtggggagatatctgaccccgatagcgacgac
gagtacccgcccgccaattcccggcagtcccggtcctctaggcgctccgagcgccacact
ggaaacggctacggccgcaccgactgcttccgcgtggagaaacatctgcttgtttacggg
tgggggcgctggagggacatcctgtctcatgcacgctgtaagcggcgtctcggggagcga
gacgtggagactatctgcagggtcatcctggtcttctgcttgctgcattaccgtggagac
gagaacattaagagcttcatctgggagctcatcaccccgccagagaacggccgggaaccc
cacacactcctcaaccactctggtttgtccatccctgttcctcggggcaggaaggggaag
agagtgaaggctcagagctcttttgatgttcagaaggtggagtggatccgcaagtacaac
cccgactccctgcttctggatgacagctaccgcaaacatctcaagcaccagtgcaacaag
gtgttgctgagagtacgtatgctgtactacctgagacaggaagttattggagaacatgct
gattctgtgctgagaggagctgatgccagggatattgacatctggatgcctgagatggag
cagcttgaggtgccatcaggttggtgggatacagaggcagaccgctccctcctcgtcgga
gttttcaaacatgggtatgagatgtacactactatgcgtgccgacgactgtctctgtttc
ctggagagagctggtcgccctgacgaccaggccattgatgctgagcagcactctgcagac
gcagagcttggagacggaggagacgatgacaagtattctgaagacccggagttcaagcct
gcgttaaggcacaccaaagacctatacgaggaggctgactccttgaacatggatgatgat
atctgtgtcgaggacaaggcattgcctgttaaaaccaaggggccgccctctggccagtcc
ggagcctgtgagtggccaaccagctcatcacttaccgcgcggctccgtcgtctaatcacg
gcataccagcgcagctacaggagagagcagctgaaggtggaggcagcagagaagggcgac
cgtaggcgcaggaggtgtgagcaggccagtaaactgaaggagattgcacgccaggaacgc
caacagaggtaccaactactaccctcaactattaactctgcaagcatatgtgtcctgaaa
ctgaggtggacccgtagagaggagtgtgacttctaccgtgtggtgtccacattcggtgtg
gagcgaataaagaaagaggcagataccccagagggggaagaggctgaactggaatgggct
cgcttccggacatttgcccgtctagaaaagaagactgacgagagtctgagccgctacttc
cgctgcttcatggctatgtgccggagggtgtgcaacctgcggcccgcctccggagaagac
ccttcagagctgggccagtctctggccccaatcactgaggagcgagcctctcgcaccctg
taccgcatcagcctgctgcgccgtctccgtgagcacgtcctgcctcacccttccctggag
gagctcctcctgctggccccgcccagctccgagctgcctgcctggtggagcactccagcc
catgaccgggagctcatgctgggttccgccctccacggcgtcagccgcactgagctctcg
gtcttcctcgacccgcagttctcattcagccaggcccgccacgactacctcgagaaccag
cagaaccagcccgcccccgccaatcccctcctccaaccacaggcagaggagggctcagtc
gtcaaagaagaggagggtctggacaaggagtcccgcatccttggagcctctgaggctctc
ggccactcagatacccagatcacacacctctcccgtcctgatgggaagggccgagcccgg
accggcttgggatggaagaagagcagggggagagggccgagaagtggaggaaataaagga
gaaagaagtgtaggagggatttccgattccggttctgactctgattctggctcgtctacc
tcctcccagcgatcaggcagctctgacgacagtggcgacagtgaaacagagagggaaaga
gctgctttgaagatggaggaagatggggagaacagcttgctctcaatgactccatctcaa
gatggtgcgccaccagagtcccttaccgacccattcagggttgattggcccaaggaccgt
gtgttgataaaccggctggacagcctctgtaccctggtgctgtctgggcagtggccaaca
gggcggcgctatgcctctgatgcccagctcaacccaggctctgacgacctaggggcaggg
gatgagctcagctttgcacggctcatgcggaaaggcaacagcacgcccggtggagaagga
gcagacggacaggaatctgagttcaccgtcaaactcctgaaggaggaggggctgaagctg
accttctctaagcatgccttgatgtccaatgggtcagggggagaggggagcggacgcagg
aagcatagggaccaagaattgtcagatccagacggagcggtcccggtggtcgatgccatg
acgggcacagtgctgagtggggagcgagcccctcgccgcagagacctgcccaactggctg
aaagagaacccagactatgaggtggagggagacatgttggagctccttgtgaaccagaag
aggaggaggaggaggaagaagaggactgagaagaccgcagcactgttgggcagtgagaag
gttaagatcattgatatgaggacaggaaagaaggttggggctacgtatggacctatgctg
caggatctgagggcgtttctggaggagaaccctgactgtgcagtggcaccagaatgggct
gagatggtccagagctctggctttctgccagacagcctcttccaccggctcctctctgca
cgctctgtcatccccaagagagtccgccgccgccaccaccaccaccatgcccctcagcct
gccccgctggaggacccagtcctgggcggaggtgtagaagagaccctggtctcagacggg
gcctacatgatggaggacgaagacttggagaattcccctttcctgactcaagcttttgat
gttaagatggaaggcggcaacagcttgtcacaaggcggatacgagagttctgacagggag
gcccttttggacgacgtcatcatggctcagaaggactcagactcttcctccagctcagag
gattga
DBGET
integrated database retrieval system
