Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386867
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Entry
139386867 CDS
T10872
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139386867
03015 mRNA surveillance pathway
139386867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139386867
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139386867
5.6.2.5 RNA 5'-3' helicase
139386867
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139386867
mRNA cycle factors
Common to processing body (P body) and stress granule
139386867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
SLFN-g3_helicase
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
AAA_16
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
139386867
NCBI-ProteinID:
XP_070988827
LinkDB
All DBs
Position
28:12212980..12224005
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGEDSVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLTNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AVNPGGRFMSTAMYDAREALIPGSVYDRSSTARTSNMYFQTHDQIGMIGPGPMASLNIPI
PFNLVMPPMPPPGYLGQVNGPQAGRGGGMKGKAGGGARGGRQRSRGMASHGGGNGQHGHM
SGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVAL
SQDSTYQGERAYQHGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacaccgaggaa
gccgacttgcttggagcagatacccagggttcggaatatgagttcacagattttacccta
ccgagccagactcaaacaggccagacgcagagtcagttggacaaccaggtgaatgggcct
gatggagttctgcagaatggggaagactctgttgtaaaagcaagtcaactccttgcagag
ttgaactttgaagaagacgaggaggacacctattatactaaagacctcccagtccatgca
tgcagttactgtggtattcacgatccggcatgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgcggcaatacgtctggcagtcacattgtgaaccacctggtcaga
gcaaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtactagag
tgctacaactgtggctgtcgcaacgtctttctcctggggttcatccccgccaaggccgac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctctcctggctg
gtgaagatcccctcagaacaggaacagcttcgggcccgccagatcaccgcccagcagatc
aataagctggaggagctctggaaggaaaaccccacagccactctggaagaccttgagaag
cctggcgtggacgaggagcctcagcacgtgctgctgcgctatgaggatgcctaccagtac
cagaacatatttggccccctggtcaaactggaggccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgaa
atttgcctgaggtacaagggagatcttgccccactctggaagggtattggacatgtcatc
aaagtaccagacaactatggtgacgagatagccatcgagctgaggagcagtgctggggct
cccgtggaagtaccacataactttcaggttgactttgtgtggaagtccacctcttttgac
aggatgcagagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaagacc
gtgctgcagcgtcctctcagtctcattcaggggccccctggcacggggaaaacggtcacc
tctgccactgtagtctaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagcaacatcgctgtggaccagctgactgagaagatccacatgtcgggcctgaaggtg
gtgaggctctgtgccaagagcagagaagccatcgactcccccgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctgcagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgctacagggccctgaagcgcacc
gccgagagggaactactcacgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
actgagcccgagtgcatggtgcctgtcatactgggggccaaacagctgattctggtggga
gaccactgccagcttggtccagtagtgatgtgtaagaaggcagccaaagcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcattaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgccttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcggctgaccgcatcaagaaaggctttgacttccagtggccacag
ccagacaagcccatgttcttctatgtgacccagggccaggaggaaatcgcaagctccgga
acctcctatctaaacagaactgaggcttccaatgtggagaagatcaccactaggctgcta
aaggccggggccaagcctgaccagatcggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctctctccacaccaagctctatcaggaggtg
gagatagccagtgtcgatgccttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccacgacgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccaccttctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggtcaac
gccgtcaaccctgggggccgtttcatgagcacagccatgtatgatgccagggaagctctt
attcctggatctgtgtatgaccgcagcagcactgcacgtacatccaacatgtacttccag
acccacgaccagattggcatgattggaccaggccccatggcctctctgaacatccccatc
cccttcaacctggtcatgccccccatgcccccgccaggctacctgggccaggtcaacggc
ccccaagcaggccgtggcggaggtatgaagggtaaggcgggcggaggggcacgaggcggg
cgccagaggagccgtggtatggcgagccatggcgggggcaacgggcagcacggccacatg
agtggcagccaggccagccaggacctgggctcccagcccttctcccagggtcccctcaca
cagggctacatcaccatgagccagccctcccagatgagccagcctggcctgtcccagcct
gaactctcccaggacagctaccttggtgatgagttcaagtcccagattgacgtggccctc
tcccaagactccacctaccagggtgaacgagcatatcaacatggcgtgactggactgtcc
cagtactag
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integrated database retrieval system
