Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386876
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Entry
139386876 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM63-like
KO
K10654
tripartite motif-containing protein 55
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139386876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139386876
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139386876
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
Sina_RING
Hex_IIIa
Motif
Other DBs
NCBI-GeneID:
139386876
NCBI-ProteinID:
XP_070988839
LinkDB
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Position
28:complement(19030012..19040125)
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AA seq
494 aa
AA seq
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MSISLGYSHSTKQDSTMDSLEKQLICPICLEMFTKPVVILPCQHNLCRKCAQDIFQASNP
YLSTRGTTVTSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMYKQEQESSSSKPEP
EPARCDQPMCEEHEDEKINIYCVTCGVPTCSLCKVFGAHKDCDVAPINTVFNKQKTELTD
CIAMLVGNNDRIQGIMSQLDETCKTVEENGRRQKSNVCESFDHLYAILEERKGDMTLKIN
AEQQEKLDYINGLMRKYREHLENMAKIVETGIQTMEESEMATFLQTAKPLLQKLIAGTNI
SNLDKVERGYDDMDHYAANFERERRALHTIDFVKDDEDDDEFEFEDGEEEVEVSGVTGVT
RTDVSPAAAVAVGANPPKPQLTSPPPLPQRPTETLGDTATLATPQAPVHATTPVQFPSLN
PTPTASAQARATTPVYFPTSTTTPVQFPSTAPVNFPSAEPPTQMSSESGSTQQNTDDKDG
PKHVFSFSWLNNQK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagtatctctctggggtattcacattccacaaagcaagacagcaccatggacagcttg
gagaaacagctcatttgccctatctgtttggagatgtttaccaaaccggtggtcattctc
ccttgtcaacacaacctttgtcgaaaatgtgcccaagatattttccaggcctcaaaccct
tatctatcgaccagaggaaccactgtgacttcaggggggcgtttccgctgcccatcctgt
agacatgaggtggtcctggacaggcatggtgtctatggcctccagaggaacctgctggtg
gagaatatcattgatatgtacaaacaggaacaggagtcctcaagcagcaagcctgagcct
gagcctgccaggtgtgaccagcccatgtgtgaggagcatgaggatgagaagataaacatc
tactgtgtgacgtgtggtgtgcccacctgctctctctgcaaggtgttcggagcccacaaa
gactgtgatgtggccccaatcaacactgtgttcaataagcaaaagactgagttgactgac
tgtatagccatgctagtggggaacaacgacaggattcaaggcatcatgagtcaactggat
gagacctgtaagacagttgaggagaatggcaggaggcagaaatccaatgtgtgtgaaagt
tttgatcacctttatgccatcttggaggagcggaaaggggacatgaccctgaagatcaac
gcagagcaacaggagaaactggactatataaacggcctcatgaggaagtatagagagcac
ctggagaacatggcaaagatcgtggagacagggatacagacaatggaggagtcagagatg
gctactttcctgcagactgcaaagcctcttctacaaaagctcattgcaggcactaacatc
tccaacctggacaaagtggagcgtggctatgacgacatggatcactacgcagccaacttt
gagcgggagaggagggcactgcacaccatagactttgtgaaagatgatgaagatgatgat
gagtttgagtttgaagatggagaagaggaagtagaagtgagtggagtgacaggggtgacc
cgtacagatgtctctcctgctgctgcagtggctgttggggccaaccctccaaagccccag
ctgacatcacccccacccctgcctcagagacctactgaaaccctaggcgacaccgctaca
ctggccactccacaggcccccgtccatgcaacaaccccggtacaattcccatccttaaac
ccaaccccaactgccagcgcacaggcccgcgccacaaccccagtctacttcccaacttca
accacaacaccagttcagttcccaagcacagccccggtcaacttcccatcagcagagcca
ccgacacagatgtcctctgaatcgggatcaactcagcaaaacacagatgacaaagatgga
cccaaacacgtcttctccttttcttggctgaacaaccagaaatag
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