KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386924
Entry
139386924         CDS       T10872                                 
Name
(RefSeq) roquin-1-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139386924
   04121 Ubiquitin system [BR:ocla04121]
    139386924
Transcription factors [BR:ocla03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    139386924
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    139386924
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf-CCCH_UNK zf_CCCH_4 Prok-RING_4 FYVE NS3_helicase_C Baculo_IE-1 zf-RING_6 RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 139386924
NCBI-ProteinID: XP_070988912
LinkDB
Position
28:13071261..13109455
AA seq 1105 aa
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD
IEQLPVNTALLQLVGGQVPKIQPVALITSPEDAQHYEEASQCVEELALYLKPLSNTRGVG
LSSTTLSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLVARLPGSSGLLSDDGLSLDVGVTRKPS
PLTNGSAVPPMPQLIARGTDLVTYDLLRKPKMDGGSNSSPESPPDSLDSGPKQGYPQPPH
AMGYSRGPGDHMSMPKQMPSGVAPRGPQMYPQQLPEMYYSDSRPPPSSSQYDPSQYPQGY
PYQQPPQYAPQRYIRNPPPPSEPAGLSYQDPYPDYGPPDRPYPAPHSGPPFSYPPPSHYD
TRGRHGPYPGPPPPPQPYPSQRDDMVRMSPAPLEGPPYHQEQAARERYPPEGFYPPGAQP
QPLRSYVREPYGRSSQPSLDYLHHRRKELMAQLEERKVIAPSPTLPHTFPSDYPPEYGEE
SSKAFGKCREPDYAGQYSPWSCDTIGSYIGTKDSKPKDVMAPGAMEMMNVDGKGRRGEPS
MDAQVRRGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPMQALGSTQGPNPKHM
AIAAEYSYENHGGWGGASYPSHQTVSSQGHFSERLPMPTQDREQLKTELQQVNQQINQQS
QIHGMELSQPGQNQGQQGGKWPGPAGGSGSAAPVSSEQLSMELHQVEREIGKRTREMDMD
SQVTHEVLYKTKTAENGQQDHKAQLEEIALALGEVSNGSSGLVQDGGVGGAMLSLTTRAS
SLSLCSEPGPGGSDLQKNGVVHSCS
NT seq 3318 nt   +upstreamnt  +downstreamnt
atgcccgtgcaagccccacaatggacagagttcctgctgtgtcccatttgcactcagacg
ttcgaggaaacggtgcggcggcccatttctctgggctgtggccacacagtctgcaagatg
tgcctaaacaagctgcaccgcaaggcctgccccttcgaccagacggccatcgccactgac
atcgagcagctgcccgtcaacacagccctgctgcagctggtggggggacaggttcccaag
atccagccggtggcccttatcaccagcccagaagacgcgcagcactatgaggaggccagt
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacaccagaggggtgggt
ctgagcagcacgaccctgagtatgctgagtcgacccatgcagaggaagctggtgaccctg
gtccactgtcagctggtggaggaggagggccgtgtgcgggccatgagggcagcaaggtct
ctgggggagcgcacagtcacagagctcatcctgcagcaccaaaacccccagcaattgtcg
tccaatttgtgggccgccgtccgggccaggggctgccagttcttgggtccagccatgcag
gaggaggctctgaagctggtgctgctggctctggaggacggctcggccctgtccaggaag
gtcctggtgctgttcgtggtccagcggttggagccacgcttcccccaggcctccaaaacc
agcataggccacgtggtgcagctcctttacagggcctcctgctttaaggtgaccaagcgg
gatgaggactcgtcgctgatgcagctgaaggaggagttccggacgtacgaggcactgcgg
cgcgaacacgactcccagattgtccagatcgccatggagggcggcctccgcatcgcccct
gaccagtggtcctccctgctctacggggaccagtctcacaagtcccacatgcagtccatc
atcgacaagttgcagacgccggcttcgtttgcccagagcgtccaggagttgaccatcgcc
ctgcagaggacgggcgaccccgccaaccttaaccgcctccgaccacacctggagctcctg
gccaacatcgacccgagccccgacgccccccctcccacgtgggagcagctggagaaaggt
ctggtggcggtgaagactgtagtccacggcctggtagatttcatccagaaccacagcaaa
aagggagctgacccacaacagcccccccagcacagcaagtacaagacttacatgtgtcgg
gacatgaagcagaagggaggctgtcctcgaggagccagctgtaccttcgcccactctcag
gaggagctggagaagtaccgtaaaatgaacaagcgtttggtagctcgcctccctggctca
tctggcctgctgtcggacgatggactctctctggacgtgggggtgacccggaagccctcg
cccctcaccaacggctcagccgtaccccccatgccccagctcatcgcccgtggcaccgac
cttgtgacctacgacctgttgcgcaagcccaagatggacggcgggagcaacagctccccg
gaatcgccccctgactctctggactcggggcccaaacaagggtacccccagccaccccat
gccatgggctactccagggggccaggagaccacatgtccatgcccaagcagatgcccagt
ggcgtggcgccccgggggcctcagatgtacccgcagcagctacctgagatgtactactct
gactctcgccccccgccctcctcctcgcagtacgacccctcgcagtatccccaaggttac
ccctaccagcagcccccccagtacgccccccagcgttacatccgcaacccccctcccccc
agcgagcccgccggactctcctaccaggacccctaccctgactacggcccacccgatcgc
ccttacccggccccccactcgggccctcccttttcctaccctcccccatcccactatgac
acccggggccgtcacggcccttaccccggcccccctcctccgccccagccctacccctcg
cagagggacgacatggtccggatgagccctgcacccctggaagggcccccttaccaccag
gagcaggctgccagggagaggtaccccccagaaggattctacccaccaggggcccagccc
caacccttgaggtcctacgtcagagagccgtacgggcgctcctcccagcccagcctagac
tacttgcaccaccgccgtaaggagctgatggcccagctggaggagaggaaggtcatcgct
ccctcgcccaccctcccccacaccttccccagcgactaccccccagagtatggggaggag
agctccaaagcctttgggaagtgcagggagcccgactacgcgggccagtactctccctgg
tcctgtgacaccatcggctcctacatcggcaccaaggactcgaagcccaaagatgtcatg
gcgcccggggccatggagatgatgaatgtggacggtaaaggtagacggggggagccctct
atggatgcccaggtcaggcgggggacagaggtgaaggacgacgaccccatcatccctttc
ggcccccagcccactgtgtcgcgcttcggggccatctcacgcacctccaagacaggctac
cagacgacaggccccatgcaagccttgggctccacccagggacccaaccccaagcacatg
gccatagccgcggagtactcctatgagaaccacggaggctggggcggagcctcctacccc
tcccaccaaactgtctcctctcagggacacttcagtgaaaggctgcctatgccaactcag
gacagagagcagctgaagactgagctccaacaggtcaaccagcagatcaaccaacagtct
cagatccacggcatggagctctcccagccaggtcagaaccagggccagcagggggggaag
tggcctggtccagcggggggttccggcagcgctgccccagtgtccagcgaacagctcagc
atggagctccaccaggtggagagggagatcggcaagaggacccgcgagatggacatggac
agccaggtgactcatgaggtcctgtacaagacgaagactgcagagaatggccagcaggac
cacaaggcccagctggaggagattgctctggccctgggtgaggtgtcgaatggctccagc
ggtctagttcaggatggcggtgtgggcggagcaatgctgtcactgaccactagggcgtca
tcgcttagcctgtgttctgaaccaggacccgggggctctgatctgcagaagaacggtgtg
gtccattcctgctcctag

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