Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386935
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Entry
139386935 CDS
T10872
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a-like isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145
Phagosome
ocla04814
Motor proteins
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139386935
09142 Cell motility
04814 Motor proteins
139386935
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139386935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139386935
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139386935
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
139386935
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
139386935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML
WDR55
WD40_WDHD1_1st
Dynein_IC2
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
WD40_RFWD3
Beta-prop_DCAF4
DUF6465
Motif
Other DBs
NCBI-GeneID:
139386935
NCBI-ProteinID:
XP_070988929
LinkDB
All DBs
Position
28:complement(34926205..34943357)
Genome browser
AA seq
656 aa
AA seq
DB search
MADKQDKSELKAELERKKQRLAQIREEKKRKEEEKNKKKDGSDSKRGGEGGAAGAPDSSD
LEKKRREAEALLQSMGIAPDITTAQPLRVITEDTCLFHYLVPAPMSPSAKSMCSETGSQD
SGDGNSRTLHWDPDPSTLQLHSDSDLLGRSLRLGMAKVTQVDFPPKQSVSYSKETQTPTC
TQTHTQAKPAEEEEEEEMAEPKPAEESKEEKADQEEKQEEVTPKDLTEEEKMQLLHSEEF
MAFFYRGSRIVERALSERVDVCFDYSGRDLEDKEGEMQAGAKMSLNRAFSDERWSKNRVV
TCLDWSPQYPELLVASYNNNEDAPHEPDGVALVWNMKFKKATPEYTFHCQSAVMSAAFAR
FHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSASAHTHPVYCVNVVGTQNAHNLISIS
TDGKMCSWSLDMLSQPQDSLELVFKQSKAVAVTSMAFPLGDVNNFVVGSEDGSVYTACRH
GSKAGISDVFEGHHGPVTGLSCHSAGGPVDFSHLFISASFDWTVKLWTTKSTRPLYSFED
SCDYVYDVMWSPTHPALFACVDGSGRLDLWNLNNDTEVPSASVCVNGSPALNRVRWAHSG
REIATGDSDGQVLVYDVGEQICVPKADEWTRLVHTLVEINENRDEGEELAAQRLVA
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaacaggataagagtgagctgaaggcggagctggagaggaagaaacaacgc
ctggcccaaatcagagaggaaaagaagagaaaggaggaggagaagaacaagaagaaggat
gggtctgactctaagcggggaggggaggggggtgcagctggggcgccagactcgtctgac
ctggagaagaagaggagagaggctgaagctctactgcagagcatggggatcgcccctgat
ataaccactgcccagcctctgagagtaataacagaggatacgtgtttgtttcactatcta
gtccccgcccctatgtctccctcagccaaatcaatgtgcagcgagacaggaagccaggac
tctggagatggaaactctaggacgttacactgggatcctgacccctctactctacagctg
cactctgactccgacctactggggcgtagtttgaggcttggcatggcaaaggtgacccag
gtggatttcccacccaaacagtctgtgtcctactccaaggagacacagacccccacctgc
acacaaacacacacacaggccaaaccagcggaggaggaagaggaggaggagatggctgag
cccaagccagcagaggagtccaaggaggagaaagctgatcaggaggaaaagcaggaagaa
gtcactcccaaagatctgactgaagaggagaagatgcagcttctccactcggaggaattc
atggcgttcttctatcgaggtagcaggattgtggagcgggctctgtctgaacgagtagac
gtctgctttgactacagcggccgagacctggaagacaaggagggtgagatgcaggcgggg
gctaagatgtctctgaacagggcgttctctgacgaacgttggtccaagaacagggtggtc
acctgtctggactggtctcctcagtaccctgagctgctggtggcctcctacaacaacaac
gaggatgctcctcatgagcctgacggagtggctttggtctggaacatgaagttcaagaag
gcaacacctgaatacaccttccactgccagtctgcagtgatgtcagcagcgttcgccagg
ttccatcctaacctggtcgtgggtgggacttactcaggccagatcgtcctatgggacaac
aggagcaacaagagaacacctgtacagagaactcctctttctgcatctgctcacacgcac
ccagtgtactgtgtgaacgtggtggggacccagaatgctcacaacctcatcagcatctcg
actgatggaaagatgtgctcctggagcctggacatgctgtctcaaccacaggacagtctg
gagctggtgtttaagcagtctaaggcagtagcagtgacctccatggcttttccgctgggt
gatgtgaacaactttgtggtcgggagtgaagatggatcagtctacactgcctgccgccac
gggagtaaagcaggtatcagtgatgtatttgagggacatcatggtccggtcactgggttg
agctgtcacagtgctgggggtcctgtggatttctcccatctgttcatctccgcctccttc
gactggaccgtcaagctgtggaccaccaagagtacccgtcctctgtattcatttgaggac
agctgtgactatgtgtatgatgtcatgtggtctcccacacaccccgccctcttcgcctgt
gtagacggatctggacgcctggacctgtggaacctcaacaacgacacagaggtgcccagt
gcaagtgtgtgtgtgaatgggtctcctgctctgaaccgtgtgcggtgggctcactcaggg
agagagatcgctacaggagactcagacggacaggtgttggtgtatgacgtaggggagcaa
atctgtgtgcccaaggcagatgaatggacccgtttggtacacacgctggtggagatcaac
gagaaccgtgatgaaggagaggagctggccgcgcagcgcctagtcgcctga
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