Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387016
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Entry
139387016 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase lubel isoform X1
KO
K11974
E3 ubiquitin-protein ligase RNF31 [EC:
2.3.2.31
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04217
Necroptosis
ocla04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
139387016
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
139387016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139387016
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
139387016
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
139387016
Multi subunit type E3
LUBAC complex
139387016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UEV
E3_UbLigase_RBR
IBR_1
IBR
RRM_PARP14_1
NID
RRM_PARP14_3
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
139387016
NCBI-ProteinID:
XP_070989066
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All DBs
Position
28:6064952..6088312
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AA seq
878 aa
AA seq
DB search
MPRVPAVLEYETLTECKYSFPVEVVSDIKNVTATYGDLRMYVDFYCFPNKEKKKLVYLAG
TIPVPHDGNTYNIPVCIWLHETHPQSRPRCYVCPSISMLINPRCPYVEASGQVLLDCLNN
WKSGLANLSLLVSEMRSAFQKETPLFAMHPIRVQMLPTAAHSSAYAESSDPGSWPQPSSS
TPRARRSSMSPTPLPREIVPPKSLKSSQSGPLRESVTGVRRSYTEELLDMGINFGVPGGV
QFPFSSTNPFITTASAPNNTPVSSEDINNLFKSLQLENVVNVYQLGTKERGQMQGDGGDR
GGGDYPPIPTAVTPLVDNQHRILVSQLPPDQSPSRVKNKLTLYFQRRSNGGGEVLDVTYP
YPPTQHDQALVSFRSPRDAEQVLLQADRIFTVNERPFRIQLKRVNSAQITVPPSVSGDKA
AIFHSLLSLEGRSFSQADVEEAVQSCRDLPSALKYLSHECPICREQVSFSKIITMTHCLC
AFCESCFKAYFSQAIKEKSIVHVVCPMCGQPDVRQSQGGVEEALDYFSLLDTQIRHYLDP
QIHELFQRKLRDRALQEMPNFRWCAHCSFGLLHEADQLRMDCPSCRKSTCSQCKTAWAPQ
HQGLSCEKFREWQLHNNPEYQTAKLENLLGRNKIECPKCKFVFYLSKGGCLHFKCTQCQH
EFCGGCNRPFKLGVGCDFSAECGSKGLHAHHPRDCLYHLRDWNVPRLHRLLQLYGVSLAG
MVKSKVGSTGTNSQGVCAVLEHREMGGDGPCGLPTLPEYSGYCILHYKECLVELINRSHA
DPAVLFDVAEMLAELQRWHIPVPQKNLQDPEALYVQHLRQTLTRKVSLRDNKLPPVKVKD
DLCPLPSSSAAGPRWSSAQRNTPTRFHDDSQLLLLLND
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgccgagggtcccagcagtccttgaatatgaaacactgaccgagtgtaaatacagcttc
cctgttgaggttgtcagtgatatcaagaatgttacagcgacttatggagacctgcgtatg
tatgtggacttctactgtttccccaataaggaaaagaagaagttagtttatttggctggt
actattccagttccacacgacggtaacacatataatatcccagtgtgcatctggctccac
gagactcacccccagagccggccgcggtgctacgtgtgtccctccatctccatgttgatc
aaccccaggtgcccatatgttgaggccagtgggcaggtgctcctcgactgcctcaacaac
tggaagagcgggctggccaacctgtcattgctcgtctcagaaatgaggtctgcatttcaa
aaggaaacgcccctctttgccatgcacccaatcagagttcagatgctacctactgcagca
cactccagtgcatatgcagagtcttcggaccctggcagctggcctcaaccaagcagctct
acaccgagagccaggcgctcctcaatgtcccccacgccactacctagagaaatagttccg
cccaagagtttaaagtccagccaatcggggcctctcagagagtctgtgactggtgtgagg
cggtcctacacagaggagctactggatatggggataaactttggagtgccaggtggagtt
cagtttccattctcctccaccaaccccttcatcactactgcctctgctccaaataacact
cctgttagttctgaggacattaacaacctattcaagagcctacagctggaaaatgttgtc
aatgtgtaccagcttggtactaaagaaagaggacagatgcaaggcgatggaggtgatcga
ggtggtggtgactaccccccaatccccactgcagtcacgcccctagtggacaaccagcat
cgtatcctggtgagccagctgccaccggaccagtcccccagccgagtgaagaacaagctc
accctctacttccagcgcaggagcaacggcgggggagaggtgctggatgtgacctaccct
taccccccgacccagcacgaccaggccctggtcagcttccgcagtcccagagatgcagag
caggtgctcttacaggcagaccgaatctttactgtgaatgagcggcctttccgtatacag
ctcaagagggtcaacagtgctcagattacggtgccgcccagcgtctccggcgacaaggcg
gccatcttccatagcctgctgtcacttgaggggcggagcttcagccaggccgacgtggag
gaggcggtacagtcgtgccgggaccttccctcggccctcaagtacctgtcccatgaatgc
cccatctgccgcgagcaggtgtccttcagcaagatcatcactatgacccattgcctgtgt
gccttctgcgagagctgcttcaaggcctacttctcccaggccatcaaggagaagagcatc
gtccatgtggtgtgtcccatgtgtggccagcccgacgtgcgtcagagccagggaggcgtg
gaggaggccttagactacttcagccttctggacacacagatcaggcactacctagatcct
cagatccacgagttgttccagaggaagctgagagaccgagccttgcaggagatgcctaac
ttccgctggtgtgcccactgctcctttggccttctacacgaggctgaccagctgagaatg
gactgtcctagttgtaggaagagcacctgctcccaatgcaagactgcatgggctccacaa
caccagggtctttcctgtgagaagttcagagagtggcaactccacaataacccagagtac
cagaccgcaaaactggagaatctcctcggcaggaataaaatagaatgtccaaaatgcaag
tttgtgttctacctttccaagggaggctgtctccatttcaaatgcacccaatgccagcac
gagttctgtggcggctgtaataggcccttcaaattaggcgtggggtgtgacttctcagct
gagtgtgggtccaaggggttacacgcccaccaccccagggactgcctgtaccacctgagg
gactggaacgtgcccagactacacaggctgcttcagctttacggagtgtccctcgctggc
atggtcaaatccaaagtgggctccacaggaacaaactcacaaggtgtgtgtgcagtactg
gagcacagagagatgggtggagacgggccttgtggtctaccaactctcccagagtacagt
ggctactgcatcttacactataaagagtgtctagtggagctgattaaccggagtcatgcg
gatccagccgttctgttcgatgtcgccgagatgttggccgagttacagcggtggcacatt
cctgttccacagaagaaccttcaggatcctgaggcactctatgtacagcaccttagacag
accctgactaggaaggttagcctgagggacaacaagctaccccctgtgaaggtgaaagat
gacctttgccccctaccctcatcgagcgctgcgggaccacgctggtcttctgctcagaga
aacacaccaacgcgcttccatgacgactcccaattgctgctcttgctcaacgactaa
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