Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387068
Help
Entry
139387068 CDS
T10872
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139387068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139387068
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
139387068
Prokaryotic type
Archaeal type
TFB
139387068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
KIF9
RB_B
BRF2-like_C_cyclin_rpt
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
139387068
NCBI-ProteinID:
XP_070989154
LinkDB
All DBs
Position
28:complement(10693750..10705242)
Genome browser
AA seq
318 aa
AA seq
DB search
MASTSRGDGLALPKVQCPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNE
KATKDPSRVGDAQNPLLNGGDLTTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARK
AVEQDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAD
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagccgtggagacggcctggcccttcctaaggtgcagtgccccaaccac
ccagacgccatgctggtggaagactacagagcaggggatatgatctgccccgagtgtggc
cttgtagtgggtgacagggtgattgacgtcggctcagagtggaggaccttcaccaatgag
aaagccaccaaagacccgtctagagtgggcgacgcccagaacccactcctcaacggggga
gacttgaccaccatgatcagcaagggaacaggcgcggctagttttgacgagttcggcaac
tccaagtaccagaaccggcggaccatgagcagttcagaccgtgccatgctaaacgccttc
aaagagattaccaccatggccgaccggatcaacctaccaaggaacatcatagaccgaaca
aataacttatttaagcaagtgtacgaacagaagagcctgaaggggcgggccaacgacgcc
atcgcatcagcctgcctttacatcgcctgcagacaagagggcgtgcctcggacgtttaaa
gagatctgcgccgtgtcccgcatctccaagaaggagatcggccgctgcttcaagctgatc
ctcaaggccctggagaccagcgtggacctcatcaccaccggagacttcatgtcccgcttc
tgctccaacctgggcctgccgaagcaggtgcagatggcggccacctacatcgcccggaag
gccgtggagcaggacctggtgcccggcaggagccccatctctgtggccgccgccgccatc
tacatggcctcccaggcctccgctgagaagaagacccagaaagagattggagacatcgcc
ggtgtggcagacgtcacaatcagacagtcgtaccgactcatctacccccgtgcagctgac
ctcttccccccggacttcaaattcgacacccctgtggacaaactgccccagctgtga
DBGET
integrated database retrieval system
