Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387071
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Entry
139387071 CDS
T10872
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
139387071
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139387071
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139387071
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C46: hedgehog family
139387071
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Morphogens
139387071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Intein_splicing
Hom_end_hint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
139387071
NCBI-ProteinID:
XP_070989156
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Position
28:complement(23271302..23273711)
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AA seq
415 aa
AA seq
DB search
MDVMLILIRIALVGFICLFLASAGLACGPGKGYGKQRHPKKLKPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADIEGNIVSSD
FLMFLDKDPVSKREFYVFETEKPNRKLRLTPAHLVFITSNVTDDDMTAVFASNVKPGQQV
FVVDEAVDHLKAVTVERIYVEEYEGSYAPVTSQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSFTDLVKKREDIRQRDGIHWYSDILYHIGTLLLDINSFHPLGMSQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgatgcttatactgataagaattgcgctcgtgggcttcatctgcctgttccta
gcatccgctgggttggcctgtggtccaggcaagggatatggaaaacaaagacatccgaaa
aaactaaagcctttggcttacaagcagttcattcccaacgtggcggagaaaacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgact
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactctttggctatttcagtcatgaatcaatgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaagaa
tctttacactatgaaggaagggctgtggatatcaccacctctgacagagataagagcaaa
tatggaatgttatcccggctcgcggtggaggcaggattcgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaagtcgggtggc
tgcttccctggatctgcctcagttctcctcgaggatggtcgcagcaagctggtaaaagaa
ctggaggtgggcgacaaggtgttagcagcagacatagaaggaaatattgtgtccagcgat
ttcctcatgttcttggacaaagatccagtgtcaaaacgcgaattttatgtttttgaaaca
gagaagcccaaccgaaagttaagactgaccccggctcacctggtcttcatcaccagtaac
gttacggatgacgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgttgtggatgaggccgtagaccacctgaaggcagtcactgtggaaaggatttacgtg
gaagaatacgagggatcttatgccccagtaacctcacaagggaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcactgggcctttgcg
ccagtcaggttggggcacgcgttgatgtccttcacagatctagtcaaaaagcgcgaggac
atacgtcagagagatggaatacactggtactcagacattctataccacatagggacattg
ctgctggacataaactcctttcatcctctaggaatgtcccaaagctga
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