KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387236
Entry
139387236         CDS       T10872                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030  DNA replication
ocla03410  Base excision repair
ocla03420  Nucleotide excision repair
ocla03430  Mismatch repair
Brite
Enzymes [BR:ocla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     139387236
    6.5.1.6  DNA ligase (ATP or NAD+)
     139387236
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     139387236
DNA replication proteins [BR:ocla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    139387236
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     139387236
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     139387236
   NER (nucleotide excision repair)
    Other NER factors
     139387236
   MMR (mismatch excision repair)
    Other MMR factors
     139387236
SSDB
Other DBs
NCBI-GeneID: 139387236
NCBI-ProteinID: XP_070989439
LinkDB
Position
28:39813527..39837324
AA seq 1121 aa
MQRSISSFFQPKTGKEKESKKSDGPGKDEPVKDKPEPIKRPLKVQNGVHEEPDSPVKKFT
KRSRQILDSDDEAPAGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD
VGGENSVDKPEVAQNNPEEKETDEEKTKDGEKEKALDVKVTATEEEKGKSEKAKERSPKE
RSPKERSPKERSPKERSPKERSLKGQKVKETSPKGQKVKERSPKERSSKGQKVKETSPKG
QKVKERSPKERSSKGQKVKETSPMGHKSVKDEKDMKEEKVSESPQVKKAPTISSFFAPRK
AAVKMEKPEKSEREGKEKSEGEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGK
EKSEGKEKSEGKEKSEGKEKSEEYIKEEATVSRTTEDVKDKKGEKTAQAQYDPSRPNYHP
VDHACWSRGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVIILSPEDLLCCVYLCL
NQLGPAYMGLELGVGETVLMKAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQRIMFQ
PANLIAGGVFNKLKDIGNMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLA
EQSVLSALSQAVCLSPPGQDFPPAVIDAGKGMSAEKQKAWIEEKSLLLKQTYCEMPNYDV
IIPVILKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQ
IHILENGEVRIFSRNQEDNTTKYPDIISRIHTVKNESVISCVLDTEAVAWDREKKQIQPF
QVLITRKRKDVAAADIKVQVCVYAFDLLYLNGESLVKQPLSCRRALLKKSFQEKEGEFVF
ARAIDSDNTDVIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGD
TMDLCVIGAYLGKGKRAGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEH
ILPKPRPYYRVDQSTEPDLWLDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRF
LRIRDDKKPEEATSGGQIADLYRKQQVVQNQGDKADLEDYY
NT seq 3366 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaaagtgatggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg
cctctcaaagttcagaatggggtccatgaagagcctgattcgccagtgaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgaggctccagccgggatagaacaggag
ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg
tcccccgcctctccagtgacctcatccgcctcccccacccctggaacccctgacaccccc
acttccatctcaccctccggaatacccaaacgccgcaccgcaaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat
aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac
gtgggaggagagaacagtgtggataagcctgaggtggcgcagaacaacccggaggagaaa
gagacagatgaagagaagaccaaagatggagagaaggagaaagcacttgatgtgaaagtg
accgcgaccgaggaggaaaaaggaaaaagtgaaaaggctaaagagagaagtcctaaagag
agaagtcctaaagagagaagtcctaaagagagaagtcctaaagagagaagtcctaaagag
agaagtttgaagggtcaaaaggttaaagagacaagtcctaagggtcaaaaggttaaagaa
agaagtcctaaagagagaagttcgaagggtcaaaaggttaaagagacaagtcctaagggt
caaaaggttaaagagagaagtcctaaagagagaagttcgaagggtcaaaaggttaaagag
acaagtcctatgggtcacaagtcggtaaaggatgagaaagacatgaaagaagagaaagtg
tcagaaagcccccaagtcaaaaaagcccccaccatcagcagtttctttgctcccaggaag
gctgctgtaaagatggagaaaccagagaagagcgagcgagagggaaaggagaagagcgag
ggagagggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgag
ggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgagggaaag
gagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaag
agcgaggagtatataaaggaagaggcgacggtgtcccgtaccacggaggacgttaaagac
aagaaaggagagaagactgcccaggcccagtatgacccgtccagacccaactaccaccct
gtagaccacgcctgctggagccggggtcagagggtcccgtatttggctgttgcacgcacc
tttgaaaagattgaggaagattctggcagattgaggaacattgaaacattatcaaatctc
ctacgctctgttatcatcctctctccagaggacctgctgtgctgcgtctacctgtgtctc
aatcagctgggtcctgcttacatggggctggagctgggagtgggagaaactgttctgatg
aaggctgttgcccaagctactgggcgacagttggacaaaatcaaggcggaggctgcagag
aagggggacttggggttggtggctgagagttcccgtaacaaccagagaattatgttccag
ccagccaatctgattgcagggggtgtgttcaacaaactgaaagacatcgggaacatgagt
gggaattctgccatgaataagaagattgacatcatcaaaggtctctttgtagcctgtcgt
ttctctgaagccagatacattgtcaggtcgctggcagggaagctgaggattggcttggct
gaacagagtgtactgtctgccctgagtcaggccgtgtgtctgtctcctccaggacaagac
ttccctccggcggtgattgacgcagggaaaggaatgagtgcagaaaaacagaaagcttgg
atagaagagaagagccttctcctcaaacagacttactgtgagatgcccaactatgatgtc
atcatcccagtcattctgaaggaggggattgatgaactccccaaccactgcaaactcact
ccaggtgtaccgttgaggcccatgctggctcaccccaccaaaggtgtaggagaggtgatg
aagagatttgatgaagcggccttcacctgcgagtacaagtatgatggagaacgagcacag
atccatatcttggagaacggggaagtgcgtattttcagtcgcaaccaggaggataatacc
accaaatatcctgacatcatctctcgcattcatacggtaaagaatgagtctgtcatatcc
tgtgtgttggacactgaggcagtagcttgggacagagagaagaaacagatccaaccattc
caggttctcatcacacggaagagaaaggacgtggctgctgctgatatcaaggtccaagtg
tgtgtgtacgccttcgacctgctgtatctcaatggagagtctctagtgaagcagcccttg
tcatgtcgcagggctctgttgaagaagagcttccaggagaaggagggagagtttgtgttc
gcccgcgccatcgactcagacaacacagacgtcatagctgagttcctggagcaatcggtt
cgagactcctgtgagggactcatggtgaagactctggagaaagatgccacgtatgaaatc
gccaagcgctctcacaactggctcaagctgaagaaggattatctggatggcgtgggggac
acgatggatctgtgtgtgatcggagcgtatctggggaagggcaagagagcagggacctac
ggaggctttctgctcgcctgctacgatgaggacaatgaagagttccagtccgtctgcaag
attgggacaggtttcaaggatgaagatttggagcaacattacaaattcctaaaggagcat
attttgccaaagccccgcccctattaccgtgtggaccaatcaactgagcccgacttgtgg
ctcgatgccgtgcaagtatgggaagtgaagtgtgccgacctatcgctgtcgccgatctac
aaggctggcatgggattgtgtgacccagagaagggcatctctcttcggttcccacgcttc
ctgaggatcagagatgataagaagccggaggaggccacttcaggaggacagattgcggat
ttatacaggaagcagcaggttgttcagaatcagggtgacaaagctgacctcgaggactac
tactga

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