Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387256
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Entry
139387256 CDS
T10872
Name
(RefSeq) ATP-dependent translocase ABCB1-like
KO
K05660
ATP-binding cassette, subfamily B (MDR/TAP), member 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139387256
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139387256
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
139387256
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_16
AAA_21
RsgA_GTPase
Rad17
AAA_5
AAA_7
AAA_29
AAA_28
AAA_25
AAA_18
Zeta_toxin
ECH_2
Motif
Other DBs
NCBI-GeneID:
139387256
NCBI-ProteinID:
XP_070989471
LinkDB
All DBs
Position
3:7584167..7605487
Genome browser
AA seq
1340 aa
AA seq
DB search
MGREDGDMPDSLPTIPEEVFAKGYPNLAFHEDKKPQERMTEGQPTVDTERKPKKGLGRKK
KEPAKAVGFFQLFRYATGCEVLLMIIGLLCAALHGIALPLMCVVFGQMTDSFVQSGQQLN
FTANFTVEEISAILNSTDGCIQIPGVDIEALMTRHAYYFIGIGCAVFLLGTFQVMLFLLT
ATKQTKRIREKYFHAILHQQMSWFDTHQIGVLNVRLTDDINTINEGLGDKICVFVQFFCT
FLSGFIIGFIFGWKLTLVILTVSPLLAGSAAVWSKILATLTSKELSAYAKAGAVAEEILV
AIRTVVAFNGQKKAVERYERNLEDAKNFGIKKAITTNVSMGFTQFVIFGTYALAFWYGTK
LSVDEPENYTIGKTITVFFSVMIGAFSLGQGAPNLEAIAKARGAAYEVYNTIDQPRPIDS
SSKEGHKPDCVKGDIEFKNIHFSYPSRKDVKILQGVNLTVPRGKTIALVGASGCGKSTTI
QLLQRFYDPDSGEITLDGRDIRTLNVKWLRENMGIVSQEPVLFGTTIAENIRYGREDATD
EDIEQAVREANAYDFISKLPDKLNTMVGERGAQLSGGQKQRIAIARALVKNPKILLLDEA
TSALDTQSESVVQAALDKARAGRTTIVIAHRLSTIRTADVIAGFSNGEVVEQGTHRELMA
KKGVYYSLVMQQSQGKPEEDEEDPVEEDNPPKYEDLDYVLYDSSDMDELEVGNEEGIENG
GFEKNSISSGRVEMKPTRRKSKKSKKDKKEKKPDEAPAIPFTRILALNKPEWPYMLVGTL
SSLVGGAVYPCVAIIFAKIIGVFSEVDPEVKRQKTMMFSLLFLLIGGVAFVTYFLKGYMF
GKSGELLTMRLRRQVFHAMMRQEIGWFDDNNNAVGVLTTRLATDASLVKGATGSRLGLAT
NTVCALTIAIVVAFIHSWQLTLLILACVPFLIGANFIQMRAMAGHASKDQGALEQSGKIS
TETVENFKTVVGLTREDVFFHKFMDSLERPYQNGLVKAPIYGLTFAVAQAIPYMVNAAIF
RFGSWLIAHCHTEYENVFLVFSVIIFAAMNIGESASFAPDFAKAKAAAGRILGLLEKKPE
IDIYSEEGEKPTDFVGDIEFRGIHFAYPTRQNVRVLQGLNVSVGPGQTLALVGESGCGKS
TSIQLLERFYSPAEGQVLVDGLDTKTLNLSWLRSQLGLVSQEPILFDCSISENIQYGDNS
REVSQDEIEEAAKNANIHDFIMGLPEKYNTRVGDKGTQMSGGQKQRIAIARALVRQPKVL
LLDEATSALDTESEKIVQQALDAARQGRTCIVIAHRLSTIQNADQIAVIQYGQVTEQGTH
TDLMAKGGAYYALVNAQVNH
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggggagagaggatggggacatgccagactctctaccaaccatccctgaggaggtattt
gcaaaaggctaccccaacctggccttccatgaggataagaagcctcaggagcggatgaca
gaggggcagccaaccgttgacacggagcgcaagccaaagaagggcctcggaaggaagaaa
aaagaaccagccaaagcagtgggatttttccagttgttccgctacgctactggttgtgag
gtgctcctgatgataatcggcctgctatgtgctgccctccacgggatagccctgcccctt
atgtgtgttgtgtttggacagatgaccgacagctttgtacaaagtggacagcagctcaac
tttacagccaatttcactgtggaggagatcagcgctatattgaactcaactgacggatgt
attcaaattcctggagttgatatagaggctctaatgactcgacatgcctattacttcatt
gggatcggttgtgctgtgttcctgctggggacctttcaggtgatgttgttcttgttgaca
gccaccaaacagaccaaacggatccgggagaaatacttccatgccatcctccaccaacag
atgtcctggtttgatacacaccagataggagttctcaacgtcaggttaacagatgacatc
aacacaatcaacgaaggccttggagacaagatctgtgtgttcgtgcagttcttctgcacc
ttcttgtcagggttcatcattggtttcatcttcggctggaagctaaccctcgtcatcctg
accgtcagtcctctcctggcaggatcagctgccgtctggtccaaaatacttgccaccctg
accagtaaggagctgtctgcctatgccaaagcaggggcggtagctgaagagatactggtg
gctatcaggacagttgtggctttcaatggacagaagaaagctgtggaaaggtatgaaaga
aacttggaggatgctaaaaactttgggataaagaaagccatcaccactaacgtgtccatg
ggcttcacccagtttgtcatatttgggacgtacgccttggctttctggtacgggaccaag
ctctctgtagacgagcctgaaaactacactattggaaaaaccattacagtcttcttctct
gtgatgattggggcgttctctttgggccagggtgcgcctaacttggaagccatcgccaaa
gcccggggtgctgcctatgaagtctacaataccattgaccagccgcggcccatagacagc
agttcaaaggaaggtcacaaaccagactgtgtgaaaggagacattgaattcaagaacatc
cacttcagctacccctccaggaaagatgtcaaaattcttcaaggagtgaatctgacagtg
cctcgtgggaagaccatagctctggttggagccagtggatgtgggaagagcaccaccatt
cagctgcttcagcgcttttatgatccagactcaggagagattaccctggatggtcgggac
atccggaccctgaatgtgaagtggctgagggagaatatgggtatcgtcagtcaggaacct
gtgctattcggaacaaccattgcagaaaacatccgctatggcagagaggatgccacagat
gaggacatcgaacaggctgtgagagaggccaacgcgtacgacttcatctccaaactcccc
gataagctgaacaccatggtgggggagcggggagcccagctcagtggaggacagaagcag
aggatagctatcgcccgggccctggtcaaaaacccgaagatcctcctgctggacgaggcc
acctccgccctggacacccagagtgagtcggtcgttcaggccgctctggataaggccaga
gcgggccgcaccacaatagtgatcgcccaccgcctgtccaccatcagaactgctgacgtg
atcgctggcttcagcaacggagaggtggtggagcagggaacacacagggaactcatggcc
aagaagggggtttactactctctggtcatgcagcagagtcaagggaagccagaggaagat
gaagaggaccctgtggaagaggataaccctcctaaatatgaggatctggattatgtccta
tatgactcatctgacatggatgagctggaagtgggaaacgaggaaggaatagaaaacggc
ggctttgaaaagaactcaatcagcagtggccgtgtggaaatgaaaccgaccaggaggaaa
tctaaaaagtccaagaaggacaagaaggaaaagaaaccagatgaagctccagccatcccc
ttcaccagaatcctggccttgaacaagcccgagtggccgtacatgttggtaggaaccctg
tctagcttggtggggggagccgtttatccctgtgtcgccatcatcttcgccaagatcatt
ggagtgttttccgaggttgacccggaagtcaaacgacagaaaaccatgatgttttccctg
ctcttccttctcatcggaggagtggcttttgtcacctacttcctaaagggttacatgttt
ggaaaatcaggagagcttcttaccatgaggctgaggaggcaggtattccatgccatgatg
agacaggagattggatggtttgatgacaacaacaatgcagtgggagttctaaccaccaga
ttggccacagatgcatctctggttaaaggggcgactgggtctaggttgggtctggccacc
aacacagtctgtgctctcaccatcgccattgtggtggccttcatccacagctggcagctc
accctcctcatcctcgcctgtgtgcccttcctcattggagccaacttcattcagatgagg
gccatggcaggccacgcctccaaagaccagggtgccctggagcagtctgggaagatatct
acagagaccgttgaaaacttcaagacagttgttggattgacacgggaggacgtcttcttt
cacaagttcatggacagtctagaaagaccataccagaacggtttggtgaaggctcccatc
tacggactaacatttgccgttgcccaagcaatcccttacatggtcaatgctgcaatcttc
cgctttgggtcctggcttattgctcactgtcacacagaatatgaaaatgttttccttgtg
ttttctgtgatcatatttgctgccatgaacataggagaatcagcatcttttgctcctgac
tttgccaaagcgaaagcagctgcggggagaattcttggcttgttggagaagaaaccagag
attgacatttacagtgaggagggagagaagccaacggactttgtcggggacattgagttc
cgagggatccactttgcgtacccgacccgtcagaacgtgagggttctccaggggttgaac
gtgtcagtggggcctggtcagaccctggccctggtcggggagagtggctgtggtaaaagc
acctccatacaactactggagcgcttctatagccctgctgaaggacaagtgttagtggat
gggttggatactaagaccctgaacctgtcgtggctgaggtctcagctgggcctggtgtcc
caggagcccatcctgttcgactgcagcatctcagagaacatccagtatggggacaacagc
agagaggtctctcaggatgagatagaggaggcagccaagaacgccaacatccatgacttc
atcatgggcctgccagagaaatacaataccagggttggggacaaggggacccagatgtct
ggaggtcagaaacagaggatagccatcgccagagcactggtcaggcagcctaaagtactg
ctgctggatgaagccacttccgccctggacacagagagtgagaagattgtccaacaggct
ttagacgccgcccggcagggccgcacctgcatcgtgatcgcccaccgcctgtctaccatc
cagaacgcagaccagatagcggtaattcagtatggtcaggtgacagagcagggtacacat
actgacctcatggctaaagggggggcttactatgccctggtcaacgcacaggtcaaccac
taa
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