Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387401
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Entry
139387401 CDS
T10872
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139387401
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Other DBs
NCBI-GeneID:
139387401
NCBI-ProteinID:
XP_070989654
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Position
28:complement(48086543..48139928)
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AA seq
678 aa
AA seq
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MFSSDQSCWFVRKVICWRAVASMAWSVLLLLPTTALFVLLSRFSLFHPILWMSECLSLLT
SASAIFSFILLCGVVLMVGFFNLEYYTVVPSIACSKIALLGQVLHPRQFVHSLVHCIMGV
VVAWCCAFTIGGRYRSLGHPCTQDESSSGPEMCLNEYHLVLLLAGAFIGYSHSLVGVVYN
MNYVSFHTMQQYKYLRFKGALPLVVKASAVQALYCLRTFLLLYFFMGYAPRAWICKTLDL
SINSSIHSLDSVSSLLDLSLLYHLWISGTFLLLTWYITVLLFRIFVTEVYSFPVQSTFTE
DAHQCLPKVITGTQPMILKFLALQDLALLSQHSPSRRLEVFSLSQPGGHPHIWTALSKEC
LSLLSDLTERLVAHHDTVATNGRAKSQSTGSNKRSTTSSEGSVTSVGMEDMKTPRPSALI
RTPGSVFLRSSVGAGLRTPLTTPFTPDLDSPFSSPALRRLTGPLEPQGALSPGFSSIQSP
HVMRRGPKLWSASTDSQLNGSPPPSPGPAPSPSQAQLKPSFLVTFLQNRKDQVKHFLAKR
MLIMYLFNKLPEASSQALFADSQVHIWALQGLSHLVAASFSEDQYGIVQTTLPTILSTLL
LLQEAVDRHFKLPHTSSKPGHCSCSMGDDSYKTLRFALRSTLKTAVYRITATFGGHLHAV
QMSAEHRKRLQHFLEYKE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgttttcatcggatcaaagttgttggttcgttcgtaaggtgatatgttggagagcagta
gccagtatggcgtggtctgtcctgctgctgctgcccaccacagctctgtttgtacttctc
agcagattcagtctgtttcacccgatactctggatgtcagaatgcctgtccctattgacc
agtgccagtgccatcttctccttcattctgctatgtggagtggtattgatggtgggcttc
ttcaacctggagtattacacagtggtcccatccatcgcctgttccaagatcgccctcctg
ggtcaggtgctccacccccgtcagttcgtccactcactggtgcactgcatcatgggtgtt
gtagtagcttggtgttgtgccttcaccatcggagggcgctacaggtccttggggcacccc
tgtacacaggatgagagtagtagtggtcctgagatgtgcctgaatgaataccacctggtg
ctgctgctcgcgggggccttcattggctacagccacagcctggtgggagtggtctacaac
atgaactacgtttctttccacaccatgcagcaatacaagtacctccgcttcaagggagct
ctgcccctagtggtgaaggccagtgctgttcaggccctctactgtctcaggaccttcctc
ctgctgtatttcttcatgggatatgcaccacgagcctggatctgtaaaacacttgacctc
agcatcaacagttcaatccattccctggacagtgtgtctagtctattggacctgtccctc
ctgtaccacctgtggatcagtgggaccttcctcctcctcacctggtacatcacagtactg
ctcttcaggatctttgttaccgaggtttacagtttccctgtccagtccacgttcacagag
gacgcccaccagtgcctgcccaaagttatcactggcacgcaaccaatgatactgaagttc
ctagccctccaggacctggctctgctgtctcaacattctccttctagacgtctggaggtg
ttcagtctcagccaaccaggcggtcaccctcacatctggacggccctgagtaaggagtgt
ctgtctctgttgtctgacctgactgagcggctggtagcccaccatgacactgtagctact
aacggacgggccaagtcccagtctacaggaagcaacaagcggtccaccacctcctcggaa
ggctccgtaacttctgtcggtatggaggatatgaagactcctcggcccagcgccctgatc
agaacccctggctcagtgttcttacgttcctctgtcggggcggggctgcgaactcccctg
accaccccctttaccccggacctagacagccccttctcctcccccgccctgcggcggctc
actggccccctggagcctcagggggccctgtcccccggcttcagctccatccagagccct
cacgtcatgaggaggggccccaaactctggtctgcttctacagactcccagctgaacggc
agtcctccgccatctcctggtcccgcccccagcccgtcccaggcccaactcaaaccctcc
ttccttgttaccttcctacagaacaggaaggaccaggttaaacatttcttggcaaagcgg
atgctgataatgtatctgtttaacaagctgccagaagcctccagtcaggccctgtttgct
gacagccaggttcacatatgggctctgcaaggtctgtctcacctggtggcagcgtccttc
tctgaggaccagtatggaatagttcagaccaccctgcctaccatcctcagtaccctactg
ctgttacaggaggctgtggatcgtcacttcaagctaccccatacctcctctaaaccaggt
cactgttcctgcagtatgggagatgacagttacaagacgctccgcttcgccctgcgatcc
accctgaagaccgctgtctacaggatcacagccactttcggaggacacctccacgctgtc
cagatgtccgcagagcaccggaagagactgcagcacttcctggagtataaagagtga
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