Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387407
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Entry
139387407 CDS
T10872
Name
(RefSeq) DENN domain-containing protein 3-like
KO
K20162
DENN domain-containing protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139387407
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
139387407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_2
Beta-prop_WDR75_1st
Beta-prop_LRRK2
uDENN
dDENN
DUF5074
Beta-prop_EML
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
139387407
NCBI-ProteinID:
XP_070989664
LinkDB
All DBs
Position
3:8572254..8598262
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AA seq
1269 aa
AA seq
DB search
MADHLPSGLLEACVVVGASGDKLKDVYQSLQQGNSTTDLLILDPEVLQVHVPPFVTKENA
DESGVPRTFSRVQCRRSFIKKKERLVVAPSGPGGAGSSEGATVTEDVSVPKDIDLMALPQ
LCFPGGLQVTNEPKEERFHFLVFTDVFGNQTHGVVVQCCRPFQEGSVFYQNGHWSSTRTT
KLYTAFAICVISKHPYYNALKDCLSCLLAQLRASRLSEERVKEFAAKLSLVPIPPPGQLH
VVFNLRPLMIVLPSREDKEHPAVDLDLHLPFLCFRSKQILQIITGILMEQRLVFFSADWA
RLTLVAECFMFYIHPLHWQHPYVPILSAQMLDFVMAPTAFLMGCHLNHFEEVAAETDDLI
LINIDDGTVSSSCSETVDLPDVPFVSAECFTKRRKGLQLQHDLEVCHQGAGTDVNEMRML
RRQWQQNLNWEIQKVTLELIVNMFRDVSGHLNYEHRVFNSEEFLKTRELADLPFYRKVLE
THIFHSFLKDRLNRKMDAFTRMEVNTRSETQKMKAMTDNPRRPTMQEMARKYSSDPEIRL
NKRLGMSLPNLGEERHLNLLRQTSLKKTIIPESAFKIPPKPVKIFKLPEFPPPMVHHHVQ
NYYGELIILLGKAISCVPPENSTLLARYFYLRGFMNTLCSKRLDALSDFQNLYKTDIEIF
PTDLVKALVDSLQKDEFSQVDRRPELKRLIFKVKTDNEMVLVQADDHVKKFQLPKTHMLQ
EDFVKRIQESGIVKDVATIHRLFEALTVGQQKQIDPEVFRVFYTFWKETEVEAQDVHLPA
EVMEHLDNNECVYKLSCSVKTNQGVGKIAMTQKRLFLLTDGRPGFIEITKFRDIKEVNIS
FSPFLLLRIPSLKIKCSLRKEVFEANLKSACDLWNLMVREMWAGRTMADDHKDPQYMQQA
LTNVLLMDAVVGCLQTQKAIFAASKLAYFDRVKHEVPVMVPKTTLETLKHKINPSLDLPA
PQTVHVLLYTPGQLSYSEADGDGNPKLWCALSGGRVVVFDAASWSMQQNCVQVGSSQLNC
MLGLDQDQVWIGSQDSIIYIIDTRSMSCNKQLTEHRDEVMDFALEESDKMRQTYSCSADG
TVILWDLSTLKVKKQFQLTCDRLMSIQLFNGTLWCCARDGIVELRKNGTPHRKMTLPEDL
RSMPTEFSSLILFLERGQLWTSCSDSDELCLWHCKDLTKPFLRVRLQNCTGVNCMIKVKN
QIWVGCSGPSPDQCRMSGKIYIVDTESHSVEKELMAHTDSVQALCSAEGRYVLSGSACQD
GKIAIWKVE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccatcttccctcagggctactggaagcgtgtgttgttgtcggagcctctggg
gataaactcaaggatgtctatcagtctctacagcagggcaacagcacaacagacctcctt
attttagacccagaggtcttgcaagtccacgtgcctccgtttgtgaccaaagagaatgca
gatgagtctggtgtccccagaaccttcagtcgagtccagtgcagacggtccttcatcaag
aagaaggagaggctagtggtggctcctagtggccctggaggggccgggagcagtgagggg
gccactgtcacggaggatgtcagcgtccccaaggacatcgacctcatggccctgccccaa
ctctgctttccaggggggcttcaagtaacaaatgaaccaaaagaagagcgttttcacttt
ctagtcttcacggatgtgttcggtaaccaaacccatggagtggttgttcagtgttgtaga
ccatttcaggaagggtcagtgttctatcagaatggacactggtcgtccaccaggaccact
aagctctacactgcttttgccatctgtgtcatatccaagcatccttattacaatgctctg
aaggactgtctgtcttgtttgctggcgcagcttagagcaagcaggttgtctgaagagagg
gtgaaggaatttgcagccaaactgtctctagtgcccattccaccccctggacaactacat
gtggtgttcaacctgagacccctgatgatcgtactgccttccagagaggataaggaacac
cccgctgtagacctggacctccatttgcccttcctgtgctttagatccaaacagatttta
cagatcatcactggtattctgatggagcagaggttagtgttcttctcagctgactgggcc
cgcctcaccctggtggcagagtgtttcatgttctacatccaccccctccactggcagcac
ccctacgtgcccatcctctcagcccagatgctggacttcgtcatggcccccaccgccttc
ctcatgggctgccacctcaaccactttgaggaggtcgctgcggaaacagacgacctgatc
ttgattaatattgatgatggaacagtgtcttcttcctgctcagagactgtcgacctacca
gacgtccccttcgtttcggcagagtgttttaccaagcggaggaagggccttcagctacaa
catgatctagaggtgtgtcaccaaggggccggcacagacgttaatgagatgcgcatgctg
aggagacaatggcagcagaacctgaactgggaaatacagaaggttaccttggagctcatt
gtcaacatgtttagggatgtcagtggtcacctgaactatgaacaccgagtgtttaacagt
gaagagttcctgaagaccagagagctagctgaccttcccttttacagaaaggtcttggag
acacacatctttcattcattcctgaaggaccgcctcaataggaagatggatgctttcaca
cgcatggaagtcaacactcgctcagagacacagaaaatgaaggcgatgacagacaacccc
aggaggcccaccatgcaggaaatggccaggaagtatagcagcgacccagagatccgtctg
aacaagaggctggggatgagcctccccaacctgggagaggagcgccatctcaacctcctc
agacaaacctccctcaagaagaccattatccctgaaagtgccttcaagatcccgcccaag
cctgtgaagatcttcaagctgccagaatttcctcctcccatggtgcaccaccatgtccag
aactactatggagagttgatcatactactggggaaggccatctcctgtgttcctcctgag
aactccaccctcctggccaggtacttctacctgcgcggcttcatgaacacgctgtgttcc
aagcgtcttgacgccctcagtgacttccagaacctctacaagacggacatcgagatcttc
cccaccgacctggtaaaggcgctagtggactcgctgcagaaggacgagttctcccaggtg
gaccggcggccagagctcaagcggctcatcttcaaggtgaagacagacaatgagatggtg
ctggtccaagctgacgaccacgtgaagaagttccagctccctaagacccacatgctgcag
gaggactttgtgaagcgcatccaggagtctgggattgtgaaagacgtcgccaccatccat
agactgtttgaggccctcactgtggggcaacagaagcagattgacccagaggtgttccgt
gtgttctacaccttctggaaggagacggaggtggaggcccaggatgttcacctaccagct
gaggtcatggagcacctggacaacaacgagtgtgtctacaagctgtcctgctccgtcaaa
accaaccagggagtgggtaagatcgccatgacacagaagaggctgttcctgctcactgac
gggaggcctgggtttatcgagatcaccaagttcagagacataaaggaggtgaacatctcc
ttttctcctttcctgctgctgaggatcccgtctctgaagatcaagtgcagtctgaggaag
gaggtgtttgaggccaacctgaagtctgcgtgtgacctgtggaatctcatggtcagagag
atgtgggctgggaggacgatggcagacgaccacaaggatcctcagtacatgcagcaggct
ttgactaacgtcttgctcatggatgctgtggttggctgccttcagacccagaaggccata
tttgccgcctccaaactggcatactttgacagagtgaaacatgaagttcctgtgatggtt
ccaaagacaacattggagacgttgaaacacaagatcaatccatcactagacctcccagcc
ccacagactgtacatgtcttactctacacaccaggccagttgagttactcggaggcagac
ggagatgggaaccccaagctgtggtgtgccctcagtggtgggagggtggttgtgtttgat
gcagccagctggtccatgcagcagaactgtgttcaagtgggatcctcccaactgaactgc
atgctgggattggaccaggatcaagtatggattggctcccaggattccatcatttacata
attgacactcgcagcatgtcctgcaataagcagctgacagagcacagggatgaggttatg
gactttgccctggaggagagtgacaagatgagacagacatactcctgtagtgccgatgga
acagtcattctgtgggacctctcaacgctaaaagtgaaaaagcagtttcaactgacctgt
gataggcttatgtccattcagctcttcaatggaacactgtggtgctgtgccagagacggc
atcgttgaactgaggaagaacggaaccccacatcgtaagatgacacttcctgaggatcta
cggagcatgcccactgagttcagcagcctcatcctcttcttagagaggggccagttgtgg
acgagctgttctgattctgatgagctctgtctctggcactgtaaagacctgaccaagcct
ttcctgagggtgcggctgcagaactgtacaggggtcaactgtatgatcaaggttaagaat
cagatctgggttggctgcagcgggccgagccctgaccagtgcaggatgagtgggaagatc
tacatagtggacacagagagccacagtgtagagaaggagctgatggcccacacagacagt
gtccaggcactgtgctctgcagagggccgctatgtactcagtggctccgcctgccaggat
ggcaaaatcgccatttggaaggttgagtag
DBGET
integrated database retrieval system
