Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387545
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Entry
139387545 CDS
T10872
Name
(RefSeq) collagen alpha-3(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139387545
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139387545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139387545
NCBI-ProteinID:
XP_070989950
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Position
28:7705868..7772503
Genome browser
AA seq
1658 aa
AA seq
DB search
MRTALLCFVFLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGETGLPGSVGYPGS
EGHPGSVGPKGDVGSYGPPGQYGNWGPEGKEGFAGTPGLPGIPGLQGPMGQQGAPGCNGT
EGKRGSTGPPGLHSSDGLRGSPGAPGPKGEPQTIRSGPPGPRGRDGDQGVSGSPGPTGPP
GEAGLRGVEGLIGLHGAPGLKGQEGRSSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGELGELGEKGCKGSLGYAGHIHFKGAKGDQGDVGTEGRPGKDGDRGPAGYKGRNGNHG
SAGPDGIPGPWGQKGGQGQDGDPGEVTMIGEAVFGSGGAKGQQGLAGPPGPTGVTGPPGS
TGFQGPPGSPAPNYGDYPYNRGAKGRSGPKGDKGDQGPIIDGEPGREGFPGTTGESGDPG
PPGPSGDSGNLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCRLCTGKGSGEPGPP
GPPGQPGFPGFNAGPGPKGEPGFKGPSGPPGQPGPHGPSGVPGPPGMKGNPGSHNHHGIK
GEKGSPGLAGRSGKDGNHGNTGFPGRKGQRGPKGDPYYGPTGLKGDVGVPGPPGPQGYQG
PDGLPGPVGIGPLGHPGSKGNSGVPGLPGIAGYPGQKGEPSKRVAYQGVPGPPGQMGLPG
LQGPPGPRGSVGLHGVHGYQGEKGDSGGFSTLGGRGPTGTKGDKGHPGPPGTSGSGYPGR
PGTLGIPGVPGSKGDVGFGAPAPVGPKGFQGGVGARGPPGDPGLLGRPGNPGPIGLNGSP
GPKGSKGVVGSQGPPGYAHTDCTGATTGPPGPPGPAGRPGPPGLNGPTGALGAPGAPGFG
RSGPTGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGTPGPRGDPGLNGRSGSGPDGFPGSG
GQPGPRGSDGRDGDKGHRGVPGPVGDKGTTGPSGPAPITDLYGLPGDPGKLGLLGFPGAR
GDPGYPGPKGIDGRDGDPGKHGPIGPPGDHGADDLYSVGGPGPSGPRGDIGSMGLPGPHG
IKGVLGYHGGLGQDGRPGPYGPKGTKGEPSYAQPGRIGPPGQKGEPALCDSHGSKGERGS
PGCAGRPGSQGPTGAKGDPGHHGHHGPLGPAGPPGTDGPPGPPGPTPSYGAPGQPGLPGP
PGLCGPKGNQGRDGIPGPAGQKGETLIVGSTPGLRGENGQPGPKGDVGFPGPTVLGPPGF
TGDQGIEGPQGPRGEPGHRAICLKGLKGDTGPHGRPGSPGRRGPRGQPGSGGYGYKGDRG
DTGSPGGRGFDGPRGDPGLPGPWGPRAIPGPPGPIGDPGHPGPPGFPGETGDHSYNPGTK
GPNGAKGRPGPPGRPGLDVSGQVRFYQGDPGPLGLPGNQGLPGPSGLPGRPGFAGPTGPK
GQHGHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFLLARH
SQTIRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSMGSCLPRFSTMPFLFCDTDNTC
RYAARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQTPDCP
RDWESLWPGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSY
WLASLDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgaggacagcattgctttgtttcgtgttcctggggatgatgttgctgggaattgaggcg
aaggattgtgcgtgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggcaataag
ggagaaaagggttactcaggagagactggtctacctgggtcggttggctatccgggctca
gagggtcaccctggatcagtgggaccaaagggggacgtgggctcttatggacctccagga
caatatggcaattggggacctgagggtaaagaaggatttgctgggacaccaggtctacca
ggcatcccaggccttcaaggaccaatgggccaacaaggtgccccaggatgcaatggaaca
gaggggaagaggggttcaactggtccacctggtctccacagcagtgatggattaagaggt
tcacctggagcacctggaccaaagggtgaacctcaaacaattagaagtgggccacctgga
cctagaggaagagacggtgaccagggtgtctctgggtcaccaggaccgacgggaccacca
ggggaagctggacttcgtggggttgagggattgataggcctacatggagcaccaggatta
aagggtcaagagggacgcagctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaagctatacgcccacgctcccttcgat
atgaagggagagctaggtgaactgggtgagaagggctgtaagggttcacttggttatgct
ggccacatccattttaaaggagcaaaaggggaccaaggggatgttggtactgagggaagg
ccagggaaggatggggatcgaggacccgctggatataaggggagaaatgggaatcacggt
tcagcaggtcctgatggaatccctggaccatggggacagaaaggtggtcagggtcaagat
ggggaccccggggaggtgaccatgattggcgaggccgtgtttggctccgggggtgccaaa
ggacaacaagggttggctggccctccaggtcccactggagttactggtcccccaggtagc
accggtttccaggggcctcctggatctccagctcctaactatggagattatccctacaat
cgcggagcgaagggccgcagtggacctaaaggggataaaggagaccaaggacccatcatc
gacggcgagccaggcagagagggctttccaggaacaactggggaaagtggagaccctgga
cccccaggaccatctggagactcaggaaatcttaagggctttataggacctccaggggaa
aagggagccaagggcttgacaggcgaacaagggtacagtggccaatatggtttaaaaggt
cagaaaggagaggtctgtaggttgtgtacaggaaaagggtctggagagccgggaccccca
ggaccccccggtcagcctggattcccaggctttaatgcaggaccagggcccaaaggagag
ccaggattcaaaggcccatcaggaccacctggtcaaccgggtccccacggcccctcaggt
gttccagggcccccaggaatgaagggaaatccaggttcccacaaccaccacgggataaag
ggagagaaaggatccccaggactagctggcagatcggggaaggacggaaatcacgggaac
actggcttccctggacgcaagggccaacgaggccccaagggtgatccgtactatgggccg
acgggtctgaagggagatgttggtgtcccaggccctcccggaccacagggataccaagga
ccagatgggttgccaggtccagtaggcataggacctcttggccacccaggatccaaaggc
aatagtggggtaccaggtctacctggcatagctggctacccaggtcagaaaggtgagccc
agcaaaagagtggcttaccagggagtcccaggcccaccaggacagatgggtctgcctggg
ttacagggccccccaggtcctcgtggtagtgttggtttacatggagtacatggttaccag
ggggagaaaggagacagtggtggattctccaccctgggaggacgaggacccactggaacg
aaaggtgacaaagggcacccgggacccccaggtacctctggaagcggctaccctggccga
cccggcacactgggaatccctggggttccagggtcaaagggtgatgttgggtttggggcc
ccagctccagtcggccctaaaggtttccaaggtggtgttggggcccggggacctccagga
gacccagggctactgggacgaccggggaatccaggaccaataggcctcaatgggtcacca
ggccccaaaggaagtaaaggtgtggtaggttcccaaggaccacctggttacgcacatact
gactgtacaggagccacaaccggaccacctggtccgccaggaccagcaggcagacccgga
cctccaggtttaaatggaccgacgggtgcgcttggggcccctggcgctccaggttttgga
cgttcaggcccgactggtgaccctgggccccctggggtctccggacccggagtgcaggga
ctagatggacagaagggaggcagagggagagatgggttaacaggcacaccaggtcctcga
ggtgatcctgggctgaatggaagatctggatcgggccctgacggattccctggatctgga
ggacaacccggccccagagggtcggatggccgtgatggggataaaggccatagaggtgta
ccaggccctgtgggggacaaaggaaccacaggcccttctggaccagcacctatcacagac
ttatatgggctcccaggggaccctggaaagcttggtctgcttggttttcctggtgcaaga
ggagaccctggatatcctggaccaaaaggcattgatgggagggatggtgacccaggaaaa
catgggcctataggtcccccaggtgatcatggagccgatgacctatattcagtaggagga
ccaggcccatctggacccaggggagatattgggagcatgggtttaccaggtccccatgga
ataaagggagttctgggttaccatggaggcctgggacaagacggtagacccggtccatac
gggcctaaaggaactaaaggagagcctagttatgctcaaccaggccgcataggaccacct
ggacaaaagggcgagccagccttgtgtgacagccatggttccaagggagagagaggctct
cctggttgcgcaggtcgtccaggctcccaagggcccactggagccaaaggagacccagga
catcatggacatcatggacccctaggtcctgcagggccaccaggtaccgatggtcctcca
ggccccccaggacccactccgtcatatggagctccaggacaaccagggttacctggccct
cctggtctctgtggtcctaaaggtaaccagggtcgcgatggcattcctggacctgctggt
cagaagggagagacattgattgtggggtcgactcctggcctacgtggagagaatggacag
ccaggtccaaagggagatgtgggttttcctggccccactgttttggggcccccagggttt
actggagaccaaggcattgaaggaccccaaggtcctcgtggtgagcctgggcaccgagcc
atttgtctcaaggggctgaaaggagacactggtcctcatggcagacctggaagccctggg
cgacggggtccacggggacagccagggtctggaggttatggatataaaggggacagggga
gacacgggctctccagggggccgaggcttcgacgggcccagaggggacccagggcttcca
gggccatggggaccaagagccatccctggacctccaggaccaataggtgacccaggtcac
cctggacccccaggattccccggtgagacgggtgatcatagttataaccccggcacgaaa
ggaccaaacggggccaaaggccggccaggaccaccaggtcgtccagggcttgacgtgtct
ggacaagtgagattctatcaaggggatccaggcccacttggtctccccgggaaccaagga
cttccaggtccaagtgggctgccaggacggccaggatttgcaggccccacgggcccgaag
ggtcagcatggacacagccctccaggcctgcctgggttccctggacgcaagggggacaag
ggatcaccgggacggacagggccggtgggctaccaggggtctccgggacagaagggttct
cgtggcccgtggggctccagcacggcaggcctggctgacagtttcctgcttgcccgacac
agccagacgatcagagtgcctgactgccccagaggtaccaccctcatctactctggatac
tctctgctcttcatcaatggcaatgagagagcccacggacaagacctaggctccatgggc
agctgcctaccacgtttctccaccatgcccttcttgttctgtgacacggacaacacctgt
cgctacgccgcccgcaacgactactcctattggctgtcgacggagaagcccatgcctcgc
agcatggacctaatcagaggagatgagatagggagctacatcagcaggtgttcagtgtgt
gagggcagctccaatgccatcgccatccacagccagaccacccagaccccagactgtcct
cgtgactgggaatccctctggcctggatactcctttgtcatgcaaacgggtgcgggtgct
gaggggtcggggcagccgctagtctccccaggctcgtgcctggaacacttccgccaggtc
cccttcatcgagtgccacggccggggaacctgcaactacttcccagactcctacagctac
tggctggcctcgctcgacccgaaccgcatgttcagtaagcctgtgccccagactgtgaag
ggacgtcttctagagaatgtcatcagtcgttgccgcgtctgcaggaaaccctattga
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