Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387839
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Entry
139387839 CDS
T10872
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139387839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139387839
Spliceosome [BR:
ocla03041
]
Complex B
Other components
Prp19-related factors
139387839
Complex C
139387839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
zf-CCCH_10
RRM_YTH1
RRM_3
zf-CCCH_PARP12
zf-C2H2_16
Motif
Other DBs
NCBI-GeneID:
139387839
NCBI-ProteinID:
XP_070990219
LinkDB
All DBs
Position
29:35920376..35930122
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AA seq
430 aa
AA seq
DB search
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEACQTCSKIKNVCQTCLLDLEYGLPIQVRDTGLSIKDDVPKSDVNKEYYTQN
MEREIGNSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKSITTLYVGGLG
DSITDSELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLNV
KWGRSQGEGGRRDGRGGKDGRGEGLTEMGLKLEPVPGLPGALPPPPVDEDTPTNYFNLGP
NSAPPVMNISLPPPPGVAMPPPPGFGPPMFHSMDPMGMPPPMGMRPPGHVHYPSQDPQRM
GAHASRHGGS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtctttaggagctaacacctacaatagacaaaattgggaagacgcggatttt
cccattctctgccagacatgtcttggagagaatccttatattcgaatgaccaaggagaag
tatggcaaggagtgcaagatatgtgctagaccattcactgtgttccgatggtgtcctggg
acccgcatgcgcttcaagaagacagaggcgtgccagacgtgcagcaagataaagaatgtc
tgtcagacctgcctgctggatctagagtatggcttgccaatacaggtccgagacactggt
ctgtcaatcaaggacgatgtgccaaaatcagatgtgaacaaggaatactacacacagaac
atggaaagagagatagggaactctgatggtacccggcccgtgggtctcctgggtaaggcc
cccagctctagtgacatgctgctgaagctagcccgcaccacaccttactacaagaggaac
agaccacatatctgctccttctgggtgaagggagagtgtaagagaggagaggagtgtcct
tacaggcatgagaagccaactgatccagacgatcccctggcagaccagaacattaaggac
cgttactatggtatcaacgaccctgtggctgacaagctgctgaagagagcctccaccatg
ccgagactggacactccagaggacaagtccatcactacactgtacgtgggggggctcgga
gactccatcacagactctgaactcaggaaccatttctaccagtttggggagatccgaacc
accaccatcgttcagaggcagcagtgtgccttcatccagtttgccacccgtcaggctgca
gagttagctgctgagaaatccttcaacaagctcattatcaacggtcgcagactcaacgtc
aaatggggcaggtcccagggagaggggggaaggagggacgggagaggggggaaggacgga
aggggagaagggctgactgagatggggctgaagctggagccggtacctggactgcctgga
gcgctacctccaccgcctgtggatgaagacacccctaccaactacttcaacctgggcccc
aactcagctcctcctgtcatgaacatcagtctacccccaccccccggtgtggctatgccc
ccccctccaggctttgggccacccatgttccactccatggaccctatggggatgccccct
cccatgggcatgaggccacctggccatgtccactacccctcccaggatccacagcgcatg
ggtgcacacgccagccgtcacggaggctcctag
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