Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387915
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Entry
139387915 CDS
T10872
Name
(RefSeq) retinoic acid receptor RXR-alpha-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03320
PPAR signaling pathway
ocla04148
Efferocytosis
ocla04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
139387915
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
139387915
03320 PPAR signaling pathway
139387915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139387915
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139387915
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
139387915
Nuclear receptors [BR:
ocla03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
139387915
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Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
139387915
NCBI-ProteinID:
XP_070990379
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Position
29:24342840..24483565
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AA seq
540 aa
AA seq
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METKPFMSLESTILPMGWFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHHPRISTGNTQR
HLHIPSPSSPSWQTPHLGRHLYQINSSGQVTSSPLSSPTSHRGMHPSLLNPSSMGPSGSL
HSPISTLSSPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQLNSQMNSVSSSEDIKP
PLGLNGVMKVPAQPSPGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDL
TYTCRDNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHTAVQEERQRAKERSENEVES
TSGINEDMPVEKILEAELAVEPKTETYTETNLGMPSSSPNDPVTNICQAADKQLFTLVEW
AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV
GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEA
YCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcatgtcattggaatctacaatcctgcctatgggatggttcctg
aagccccagtgctcgctggctccgcccccccagcgaggacgctcgggggaggcctgctcc
tgtttcactggcatgtgtcacctacaccacccccggatatctacaggtaacactcaacgc
catctccacatcccctcgccatcttccccgtcatggcagactccgcacctgggaagacac
ctgtatcaaataaattcatcaggtcaggtgacctcatctccactgagctctcccacgtcc
caccggggcatgcacccatccctgctcaacccgtcctccatggggccctcaggctccttg
cactctcccatcagcaccctgagttctcccatgaacggcctgggctcgcccttttctgtc
atcaactcccccatgggcccacactccatgtcctcgcccggcatggggtacggccccagt
gtcagcccccagctgaactcccagatgaactcggtcagcagctcggaggacatcaaaccc
ccgctgggtctcaacggggtgatgaaggtgcccgcccagccctcgccggggtgcatgcct
ctctccctcaccaaacacatctgtgccatctgcggagaccgatcctcaggtaaacattat
ggagtgtacagctgtgagggctgtaaaggcttcttcaagaggacagtgcggaaggacctg
acctatacctgccgcgacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgc
cagtactgtcgctaccagaagtgtctggcctgtggaatgaagagagaagttttgttacac
acagccgtccaggaggagcgccagcgggccaaagagcgcagtgagaacgaggtggagtca
accagcggcatcaacgaggacatgcccgtggagaagatcctggaggccgagctcgctgtg
gaacccaagacagagacctacaccgagaccaacctgggcatgccatccagctcgcccaac
gatccggtgactaacatctgccaagcagccgacaagcagctctttacactggtggagtgg
gccaagaggatcccccacttctctgagctgcccctggacgaccaggtcatcctcctacga
gcagggtggaatgagctcctcatcgcatccttctcacaccgttcgatagcggtgaaagat
gggatcctcctggcaacagggctacacgtccatcgtaacagcgcccacagtgctggagtg
ggagccatctttgacagagtactcacagaactggtgtccaagatgagagacatgcagatg
gataagacagagctggggtgccttcgagccattgtcctcttcaacccagattctaaaggc
ttgtcaaacccaggcgaggtggaggctttgagagagaaggtctacgcctctctggaggcc
tactgcaaacagaaatacccagatcagcctggcaggtttgccaagctgttgctgcggtta
ccagccctgcgttccattggtctgaagtgtctggagcacctgttctttttcaagctcatc
ggggacacgcccatcgacaccttcctcatggagatgctagaggcgccccaccaaatgaca
taa
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