KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387928
Entry
139387928         CDS       T10872                                 
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36 isoform X1
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03440  Homologous recombination
ocla04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    139387928
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    139387928
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ocla01002]
    139387928
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocla04121]
    139387928
   03036 Chromosome and associated proteins [BR:ocla03036]
    139387928
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139387928
Peptidases and inhibitors [BR:ocla01002]
 Metallo peptidases
  Family M67
   139387928
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    139387928
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    139387928
   BRISC complex
    139387928
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     139387928
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     139387928
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172 REP_ORF2-G2P
Other DBs
NCBI-GeneID: 139387928
NCBI-ProteinID: XP_070990419
LinkDB
Position
29:complement(28509080..28555316)
AA seq 296 aa
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRV
EISPEQLSSAATEAERLADMTGRPMRVVGWYHSHPHITVWPSHVGKNQSTPLPHQFHNFS
FHCHGKLFQLVCLCHSFSTTDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQ
SVQAQKGSEYERIEIPIHVVPHEAIGKVCLESAVELPRILCQEEQDTYRKIHSLTHLDPI
TKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNRQSVIELQLDKERLTQELATM
NT seq 891 nt   +upstreamnt  +downstreamnt
atggcagtgagcgcagttcacctcgaatcagatgcctttttggtttgcatgaatcacgca
ttaagtaccgagaaggaggaagtaatgggactctgcatcggagaggtggacaccaaccgc
atcgtccacattcactctgttattattctgcgacgctcagacaagaggaaggatcgcgtg
gaaatctcgcctgagcagctatcttcagctgctaccgaagctgagaggttggctgatatg
actggacggccgatgcgtgtagttggttggtaccactctcacccccacatcactgtgtgg
ccatcacatgtgggtaagaaccagagcacccctctaccacatcagttccacaactttagt
tttcactgtcatggcaaactgtttcagttggtgtgtctgtgtcattcattttctacaaca
gatgtaaggacacaggccatgtaccaaatgatggaccagggctttgttgggctgatattc
tcctgtttcattgaggataagaacacaaaaactggtcgagttctctacacctgcttccag
tctgtacaagcccagaaaggttctgagtacgagagaatcgagatcccaattcatgtggtc
ccgcatgaggccattgggaaagtgtgccttgaatcagcagtagagctcccaagaatcctc
tgccaggaagagcaggatacctacagaaagattcacagcttaactcacctggatccgatc
acgaagatacacaatggctcagtgttcactaagaacctgtgtagtcagatgtctgctgtg
agtggtcccctgctgcagtggctggaggaccgtttggagcagaacagacagagcgtcatc
gagctgcagctggataaggagagactaactcaggagctggcaaccatgtga

DBGET integrated database retrieval system