Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139387944
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Entry
139387944 CDS
T10872
Name
(RefSeq) nibrin-like
KO
K10867
nibrin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03440
Homologous recombination
ocla04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139387944
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
139387944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139387944
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139387944
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
139387944
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
139387944
BRCA1-C complex
139387944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nbs1_C
NIBRIN_BRCT_II
FHA
Yop-YscD_cpl
BRCT
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
139387944
NCBI-ProteinID:
XP_070990446
LinkDB
All DBs
Position
3:complement(11445411..11462639)
Genome browser
AA seq
842 aa
AA seq
DB search
MWTLNPLESGGVTHYLLPENEYVVGRKNCEVILPNDQSISRAHAHLTATDQALTLKDSSK
YGTFVNEERLSGDSPRSLTAGDRVTFGVFHSKFSVQQVTVVVCSSCVDNEGKVSLSQTLQ
LLGGRLTNTWTQDCTHLVMPTVKVTIKTICALLCCRPIVKQEFFTELTEALQQKQPPPKA
ESFFPEIDEPSLNKDEVDLTERPERKELFTSKTFLFLNAKQQKRLSLAVSCGGGRSQLLE
EGSVPVSLLESPLSCVIGMATGNSQALLPHSTKKWADSVGRILQRKGLRFITESEIGLAA
IYVSCDKYCNPSNQKADSESMRMKPTIPGATLSQNAPVDETVMPVASQNITAYAVNTEPS
QGISGVDVAGVRAVGETPEIDQSRTTSHLNRPKPSGRELAGTCTVAETMMSSFSASDSAG
GGGSDRKKGELQHPGGGKGDAITRFLATASRTNGGVQTMSPQKCSSQKQQVSQKCSPQKQ
STLTNFFQPVGKKRPREGEESPTVQSEAKFSRREEDMENTKRTVPQHSETSNPTPPPTGR
SQGQHSSGAHLFPGQTEALSEGFSNPAQQGLQSRKRKEMEETKGGGALEIEMDELESIMS
EDMDESDEPMSASQGQRLKLTEQSSTNQGQRSQLTDKSSTNRKQLLETVELTSANKKQRV
YPVEPITANHRSGLDSEERSSASRRQRAEPVAEVKDEEVSLIESKPVNGVTPGHLEDPET
DAKPVKQDASGLGSENLPSRLIVVEFKSLTVATPARPKPRPMETHGNVNRKDFKRFRKVP
VPGAQGLPNIIGGSDLLAHNRGKNSELEEWLRDAAEDECQNKKEETLGDDLFRYNPKPTK
KR
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtggacactgaaccctttagaatccggaggtgtcacccactacctcctgccagagaat
gagtatgtggtggggcgtaagaactgtgaggtcatcctgcccaatgaccagtccatcagc
cgggctcatgctcacctcactgctacagatcaggccctgaccctgaaggacagttctaag
tatggcacgtttgttaacgaggagcgtctgtcaggagactcccctcgcagcctgacggca
ggggacagagtgacatttggggtctttcacagcaaattcagtgtgcagcaggtaactgtg
gtggtgtgctcgtcctgtgttgataatgaagggaaggtctctctgtctcagaccctgcag
cttctaggtggccggctgaccaacacctggacacaggactgcactcacctggtcatgccc
actgttaaagtcaccatcaagactatctgtgcgttgctgtgctgtcggcccatagtcaag
caggagtttttcactgagctcaccgaagccctgcaacagaaacaaccacctccaaaagct
gagagtttctttccagagatagacgagcccagtctgaataaggatgaggtggacctgaca
gagaggccagaacgtaaagaacttttcactagcaagaccttcctcttcctcaatgccaaa
cagcaaaagcgtctgagtttggcagtgagttgtggaggtgggaggagccagctcttggag
gaggggtctgtccctgtgtcactcctggaatcaccattgagctgtgtgatcggcatggca
acgggaaactcccaagcactactgccccattccactaagaagtgggcagactctgtgggg
aggattctacagaggaaaggtcttcgattcatcacagagtctgagatcggattggctgcc
atctatgtcagctgtgacaagtactgcaatccctccaatcagaaggctgactcagaatcc
atgagaatgaagcccaccatccctggcgccacgctatcccagaatgcaccagtggacgag
acggtaatgccagtggcatctcagaacatcacagcctatgctgtaaacacagagccgtca
cagggcatcagtggggtggacgtggctggggtgagagcagttggagagacccctgagatt
gaccagagccggaccacctctcatcttaaccgacccaaaccctcaggccgagagctggcc
gggacctgcacagtggcagagactatgatgtcatcattcagcgcctcagacagtgctggt
ggtggcggctcggacagaaaaaagggagagctacaacatccaggtggagggaaaggtgat
gctatcaccagattcctggccacagcctctcggaccaacggaggagtgcagacgatgtct
ccacagaagtgctcctcccagaaacaacaggtctcacagaaatgttccccccagaaacag
tctaccctcactaatttcttccagcctgttggcaagaaaagacctagggaaggcgaggag
tcccctactgtccaatcagaggccaagttctccaggagggaagaagacatggagaatacg
aagaggacagtaccacagcactcagagacctccaacccaacccccccccccacaggcagg
tcccagggccaacacagctcaggtgcacatctgtttccaggtcagactgaggctctgtca
gaggggttctccaaccctgcccagcaggggctccaatccaggaagaggaaggagatggag
gagactaaagggggtggggctttagagatagagatggacgaactggagtccatcatgtct
gaggacatggacgaatcggatgagcccatgtcagccagtcaaggccagcggttgaagctg
acggaacagagttcaaccaatcaaggccagaggtctcaactgacagacaagagctcaacc
aatagaaaacagctcctagagacagtggaacttacctctgccaataagaaacagcgggtt
tatccagtggaaccaatcacagccaatcataggtcaggcttggattcagaagagcgatcg
tcagccagcagacgacagcgagcggagcctgtagctgaggtcaaagacgaagaggtgtct
ctcattgagtcaaaaccagttaatggtgtgacccctggtcatctggaagatccagagact
gatgccaaacctgtcaaacaggatgcctcaggtttagggagtgagaatctccccagcaga
cttatagtggtggagttcaaatccctcaccgtggcaacaccggcaagacctaaaccacgc
cccatggagacgcacggcaatgtcaacaggaaggactttaaacgcttccgcaaggtccca
gttcccggtgcccagggtttgcccaacatcattggcgggtcagacctgttggcccacaac
cgaggcaagaactctgagctggaggagtggctgagagacgcagcagaggatgagtgtcag
aacaagaaagaggagactttgggagatgacctcttcaggtacaaccccaaacccaccaag
aaaagatga
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