Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388051
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Entry
139388051 CDS
T10872
Name
(RefSeq) syntaxin-5-like
KO
K08490
syntaxin 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
139388051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139388051
Membrane trafficking [BR:
ocla04131
]
SNARE
Syntaxin (Qa)
Stx-cisGolgi
139388051
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
Syntaxin-5_N
Apolipoprotein
DUF16
Motif
Other DBs
NCBI-GeneID:
139388051
NCBI-ProteinID:
XP_070990650
LinkDB
All DBs
Position
29:complement(29227708..29236247)
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AA seq
350 aa
AA seq
DB search
MNTRRRHGPRNSQEGVYLGPAQTQSPLIQLQDPQLTAPSPPPPAPLVDISNMSGRDRTNE
FQSVCRSLQGRQNAVQSSKPALSAVRQRSDFTLMAKRIGKDLSNTFAKLEKLTILAKRKS
LFDDKAVEIEELTYIVKQDINSLNKQIAQLQGLVRSRQSQNGKHLQTHSSTIVVSLQSKL
ASMSNDFKSVLEVRTENLKEQKSRRDQFSQAPASSSHLHASNFGNSLLMQDDSKRTAEVS
IDMDFRASQQLQLVNEQDSYIQSRSDTMQNIETTIVELGSIFQQLAHMVKEQEETVQRID
ANVEDTQLNVDMAHSEILKYFQSVSSNRWLMVKIFLVLIVFFIVFVVFFA
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgcgtcgtcgccacggtcctaggaacagccaggaaggggtgtacctagggcct
gcccagacccagtcaccgctgatccagttgcaggacccacaactcacagcccccagtcca
cccccacctgctccactggtggacataagcaacatgtcgggcagggaccgcaccaatgag
ttccagtcagtctgcaggtcactacaggggagacagaatgcggtccagtccagcaagcca
gccctcagtgcagtcagacagcgcagtgactttacactcatggcaaagaggattgggaag
gacttgagtaacactttcgccaaactggaaaaactcacaatacttgccaaaaggaaatct
ctttttgatgacaaagctgtggagattgaggagttaacctacattgttaaacaggacata
aacagtctgaataaacagatagcacagctgcagggtcttgtgcgctccagacagagtcag
aatggcaaacacctacagacacattccagcaccatcgttgtctccctccagtccaaactg
gcatcaatgtcaaacgacttcaagtcggtgctggaggtcaggacagagaacctcaaagag
cagaagagtagaagagatcaattttctcaagccccagcatcctcctcccatctacatgcc
agcaacttcggtaactcattgttaatgcaggacgactctaaaaggacagctgaagtctct
atagacatggacttccgtgccagccaacagctgcagcttgtcaatgaacaggactcgtac
atccagagccgttcagacaccatgcagaacatagagaccaccatcgtagagctgggctcc
atcttccagcagctggcccacatggtgaaggagcaggaggagacagtgcagagaattgat
gccaatgtggaggacacccagctcaacgtggacatggcacactccgagatcctcaagtac
tttcagtctgtctcatccaaccgctggctcatggtcaaaatcttcctcgtcctcatagtc
ttcttcatcgtctttgtggtcttctttgcttga
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