KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388074
Entry
139388074         CDS       T10872                                 
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein-like isoform X1
  KO
K12842  U2-associated protein SR140
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139388074
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocla03041]
    139388074
Spliceosome [BR:ocla03041]
 Complex A
  U2 snRNP components
   U2 related factors
    139388074
 Complex B
    139388074
SSDB
Motif
Pfam: Surp RRM_1 cwf21 CID CTK3 RRM_7 SET_assoc
Other DBs
NCBI-GeneID: 139388074
NCBI-ProteinID: XP_070990699
LinkDB
Position
29:complement(30113952..30126563)
AA seq 897 aa
MADKNGKKGKPVGVKRTLTKREQEDLKKKEEEKAAEVFEEFLACFDSNDKSGVKTFVRGG
IVNATKEEEAVEVKKSKLYRPITKFTSVSQNVSPAHSSEIRRPIVKKKTEEKKKSNLELF
KEELKQIQEEREERYKRKTNEPGGGYGDLDIPLTRRSTTYERLPPVFDDDPAIPNTTNLY
IGCISPKMNEEMLCKEFGKYGPLASVKIMWPRSDEERTRVTNRGFVAFMTRKDAERALAA
LDGKTVMGFEMKLGWGKAVRIPPQPLYTPIGVLKMSTPPPPSGLPFNAQPRDRFRNDFTK
PWGRSKEELDKTLSEAVVKVVIPTERNLLGLIHRMIEFVVREGPMFEAIIMSKEKNNPDL
RFLFDNKSQEHVYYRWKLYSILQGEPPSEWRTADFRMFRGGSIWRPPLLNPYLHGDEEAG
EEEESPSLEEELLKKGQLKTEHRERLEMLLRGLTPRREDIGDAMLFCLERAEAAEEVVGS
IAESLSLLQTPLQKKIARLYLVSDILYNSCAKVANASYYRKYFEAKLPQIFSDISDAYRN
IQARLQAEQFKQKIMGCFRAWEDWAVYPESYLIQLQNIFLGLIKAGEEVIERVEVSSPDL
DGAPLDGAPLDGAPLENLDGSPLAWDPASLDGVPVDDIDGVPLCAPMEDIDGMPLDELAH
SRVALSKWERVDDADALPQANTESKWDTLGERDLVDGLNASANIKGGDGKSEDDSSDDDS
PSKYDNADFKSSLSSFEMSESKRSRLRELEVKVMKFQDELESGKKPRKSGLNMQKQVAHY
RNKLLQKEFDKDDKEKRERSIPKSKERSKKDERRDKAEETSKGRDKEKSKRSQDRDRGRS
RDTEERTQKYRGHSPAKIKSKSPKKSKRSPSPVRKTWRRSSSRSPHRSHKKTKKSKH
NT seq 2694 nt   +upstreamnt  +downstreamnt
atggcagacaaaaatggcaagaaagggaaacctgtaggtgtgaagagaacattgaccaag
agagaacaagaagatctgaagaaaaaggaagaagaaaaagcagctgaagtttttgaagag
tttttagcttgttttgacagtaacgacaaaagtggagtgaagacttttgtccgtgggggt
atcgtcaatgcaactaaagaagaggaagcagtagaggttaaaaagagcaagctttaccga
ccaatcaccaagtttacttcagtgtcccagaacgtctcaccggcacactcttctgaaatc
agaaggcctattgttaaaaagaagacggaagagaagaagaagagcaaccttgaacttttt
aaagaggagctaaagcaaatacaggaggaacgtgaagaaaggtacaaaagaaagacaaat
gagcctgggggaggatatggagacctggacataccactaacgcgacgatcaactacatat
gaacgtctccctccagtatttgatgatgacccagccataccgaacacaaccaacctgtac
attggctgcattagccccaagatgaatgaagaaatgctttgcaaagagtttggcaagtat
ggtcccctggcgagtgtgaagatcatgtggccccgtagtgacgaggaacgcacaagggtc
acaaatagaggctttgtggccttcatgaccaggaaagatgcagaaagggccttggctgct
ctagacggtaaaacggtcatgggttttgaaatgaagctgggatgggggaaagctgttcgc
atccctccccagccactctatacacccataggggtacttaaaatgtccacacccccaccc
ccctccggcctgcccttcaacgctcagcccagagaccgcttccgcaatgactttaccaag
ccatggggcaggtccaaggaggagttggacaagactctgtccgaagctgtagtcaaagtg
gttatcccaacagaaaggaatctgttaggcctcatccacaggatgatagagtttgtggtg
cgtgagggacccatgtttgaagccatcattatgagcaaagagaagaacaaccctgacttg
aggtttctctttgacaacaaaagccaagagcatgtgtactaccgctggaaactctactcc
attctccagggcgagccccccagtgagtggaggacagcagacttccggatgttccgtggg
ggctccatctggaggccgcccctcctaaacccctacctccatggagatgaggaggcggga
gaggaagaggagtctccctccctggaggaggagctactgaaaaagggccagctgaagaca
gagcacagggagagactagagatgctgctgagaggactcacccctcgtagggaggacatt
ggtgatgctatgctgttctgtctggagagagccgaggcagcggaggaggtggtggggtcc
atcgcagagtccctgtccctccttcagacaccactgcagaaaaagattgccagactgtac
cttgtatccgacatcttgtacaactcctgtgccaaagttgccaatgcatcttattatcgc
aaatattttgaagcaaaattgccccagatatttagtgacattagtgatgcatatcgaaac
atacaagcaagactacaagctgaacagttcaagcaaaagataatgggctgtttcagggcc
tgggaagactgggccgtatacccagagtcttacctgatccagctacagaacatcttccta
ggtctgatcaaggcaggagaggaggtgatcgagagggtagaggtgtcgtctccagacctg
gatggagccccgttggacggggcgccgttagacggagctccgctggagaacctcgacggc
tcgcccctggcctgggaccctgcctccctggatggggtgcctgttgatgacatcgacggg
gttcccctgtgtgcacccatggaggacattgacggaatgcctttggatgagctggcccac
tcaagagtggctctatctaaatgggagagggtggacgatgctgacgctctcccacaagct
aacactgaatccaaatgggacactttgggagagcgagacttggtggatggcctgaatgcc
agtgctaacattaagggaggagatgggaagtccgaggatgacagcagcgatgatgacagc
ccctctaagtacgacaatgctgacttcaagagctccctcagcagttttgagatgtccgaa
agcaagaggagccggctgagagagctggaggtgaaggtgatgaagttccaggatgagctg
gagtctgggaagaagcccaggaagtcggggttaaacatgcagaaacaggtggcgcactac
aggaacaagctattgcaaaaggagtttgataaggatgacaaggagaagagagagagatcc
attccgaaatcaaaagagcgatcaaagaaggatgagcggagagacaaggcggaggagacc
agtaaaggacgggacaaggagaagagtaaaaggagtcaagaccgggacaggggacggagt
agagacacagaggagcggacacagaaatacagaggacattctcccgcaaaaatcaagtca
aagtctcccaagaagtccaagcggtcgccctcgccagtcaggaagacgtggaggaggtct
agctcccggtcgccacaccgctcccacaaaaagactaagaagagcaaacactga

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