Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388126
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Entry
139388126 CDS
T10872
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139388126
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139388126
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139388126
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139388126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
EGF_Teneurin
fn3
Fibrinogen_C
EGF_Tenascin
EGF_2
EGF
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_Dep-1_1st
hEGF
NDNF_C
EGF_integrin
Motif
Other DBs
NCBI-GeneID:
139388126
NCBI-ProteinID:
XP_070990800
LinkDB
All DBs
Position
29:13941949..14006068
Genome browser
AA seq
1849 aa
AA seq
DB search
MGTKSILGCVFLTLLLNLCQAGLVRKLLRDKRATLTTPGGNNVTLTSADQPVVFNHVYKI
NVPSGSLCSVDLDALGSTSLEPQDAAPPSSLRTTEHTLDGQNQIVFTHRINIPQQECACT
DGLPDLKVLLSRLEMLEGEVSTLRDQCASGDAGCCSVQPVTGEVGTKPYCNGHGNYSADT
CGCICEPGWKGHNCTESECPNNCQDQGRCVDGKCVCFEGFGRDDCSLKVCKVDCGGNGQC
IGGVCVCAKGYTGEDCSQTDCLNNCLSRGKCVDGECVCEEPWTGYDCSELICPNDCYDRG
RCVNGTCYCEEGFTGVDCVEKTCPSDCLGNGFCVDGQCVCSAGYTGEDCSKLTCPSDCND
RGVCFNGMCICNAGYQGEDCSQLACPNNCHNRGQCVNRQCVCNVGYQGEDCSELSCPNNC
QDQGRCVDGKCICFEGFGRDDCSLKVCKVDCGGNGQCIGGVCVCANGHTGEDCSQTDCLN
NCLSRGKCVDGECVCEEPWTGYDCSELICPNDCYDRGRCVNGTCYCEEGFTGVDCVEKTC
PSDCLGNGFCVDGQCVCSAGYTGEDCSKLTCPSDCNDRGVCFNGMCICNAGYQGEDCSQL
ACPNNCHNRGQCVNGQCVCNVGYQGEDCSELSCPNNCLNRGRCVNGQCVCDEGFGGEDCS
IKICPSDCYGSGDCVDGRCVCYAGFTGEDCSELSCPNNCLNRGRCVDGQCVCDEGFTGED
CTEKHCPNDCLDRGYCVDGKCVCLEGYAGVDCSELTCPDNCNNRGHCVNGKCMCEERYMG
DNCGELSCLNNCQDMGRCVNGQCLCDEGYIGEDCSEVSPPKDLTVTEVTTETVDLTWNNE
MLVTEYLIAYVPTSPGGLYQEFRVPGDKTAATVSELEPGIEYLINVYAILSNKKSIPISA
RVATNLPEPDGLKFKSVRDTSVEVLWDQLDIPFDAWELYVRNTKEENGKILTTLPSSQTM
YEQSGLGPGQEYEVSVGVIKNNTRGPQSTKIITTRIDGPRQVEVRDVTDCSGLVTWFQPV
AQVDGVTVSYGPSSHPTERTSVDLSTSDKQYSIDSLSPDTEYQVSLISRRGDYTSEPVSE
TFTTDLDAPKDLKPLGQTDDSVTLEWINSRADVDSYRVKYSPISGGSHGEEVFSRGSGDS
TQATITGIKPGTEYGIGVTAVKNERESLPATTNAATDLDGPKDLEVSESTETSMTLVWRR
PRAKITIYRLVYISRDGRREEVEVPGTATTYVLTNLTPGMLYTITLVAERGSKKSTPVTL
SASTEDLGPVVANLTVSDVTWDSFSVSWTPEDGEFESFVIEVTNLQEGLESVNLTLSGDA
FSLGISGLSPNTSYRIGLYGLHKGSFQEPVYTEVTTGLGAPRGIRFSEVTESSAIVHWTM
PRARVDSYRIVYVPLQGGSPMTVLADGTETQALLPDMLPGVTYQVTIFSMKGLEESDPGT
DTITTSLDRPQGLSAVNVTDTTALLLWQPTRATVDGYVITYSADSGSPVMEHVSGNTVEF
EMGSLVPATHYTVGVYAMREALKSGTTTTGFTTDVDSPRDLAASNVQTDSATLTWKPPRA
DITGYVLTFTSSDSTVREVVLSPTATSYSMTQLSGTTDYNVRLQAIAGAQRSRHVTTVFT
TIGVLYRYPKDCSQALLNGDTTSGIYTIYLGGEESQPIQVYCDMTTDGGGWMVFLRRQSG
KLEFFRNWKNYTGGFGDINAEFWFGLANLHKMTTAGQYELRVDLRDNGESAYAQYDKFTI
AEPRSRYKIHIGGYSGTAGDSMTYHQGRPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRV
NLMGRYGDDSHSKGINWFHWKGHEHSIQFAEMKIRPVNFRNFESRRKRS
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atgggaactaaaagcattttagggtgtgtcttcctgactctccttctcaacctctgccaa
gctgggctggtgagaaaattacttagggataaacgggcgaccttgacaacccccggcgga
aacaatgtgaccctgaccagcgctgaccaaccagtggtcttcaaccacgtctacaaaatc
aacgtcccttccggctcactatgctcagtggacctggatgccctaggaagcaccagcctc
gagccccaggacgcagctccgccttcaagcctccgcaccaccgaacataccctggatggg
cagaaccagatagttttcactcaccgcattaacattcctcagcaggagtgtgcatgcact
gatgggctcccggatctgaaggtactcctgagcagattggagatgctggagggagaggtg
tccacgctgagagatcaatgcgctagtggagacgctggctgctgcagcgttcagccagtc
acaggtgaggtggggaccaagccttattgcaatggccatggcaactacagtgctgacacc
tgtggttgcatttgcgagcctggctggaagggacacaactgcaccgagtctgaatgcccc
aacaactgccaggaccaaggtcgctgcgtggatgggaagtgcgtctgctttgagggcttt
ggcagggacgactgttcactcaaagtttgcaaagtggactgcggtgggaacggacaatgt
attggtggggtctgtgtctgtgccaagggttacactggagaggactgttctcagacagac
tgcctgaacaactgcctaagccgtggaaagtgtgtggatggggagtgtgtgtgtgaagag
ccctggacgggctacgactgctccgaactcatctgccccaacgactgctacgaccgcggc
cgctgcgtcaatggaacctgctactgcgaagaaggattcaccggggtggactgtgtggag
aaaacctgcccaagtgactgcctgggaaatggtttctgtgtggacggccagtgtgtctgc
agcgctggctacactggagaggactgctccaagctcacctgccccagtgactgcaacgat
agaggtgtctgcttcaacggcatgtgtatctgcaatgctggctaccaaggagaggattgt
agccagctggcttgtcccaacaactgccacaacaggggacagtgtgtcaacagacaatgc
gtctgcaatgtaggctaccagggagaggactgctctgagctctcctgccccaacaactgc
caggaccaaggtcgctgtgtcgatgggaagtgcatctgctttgagggctttggcagggat
gactgttcactcaaggtttgcaaagtggactgtggtgggaacggacaatgtattggtggg
gtctgtgtctgtgccaacggtcacactggagaggactgttctcagacagactgcctgaac
aactgcctaagccgtggaaagtgtgtggacggggagtgtgtgtgtgaagagccctggacg
ggctacgactgctccgaactcatctgccccaacgactgctacgaccgcggccgctgcgtc
aatggaacctgctactgcgaagaaggattcaccggggtggactgtgtggagaaaacctgc
ccaagtgactgcctgggaaatggtttctgtgtggacggccagtgtgtctgcagcgctggc
tacactggagaggactgctccaagctcacctgccccagtgactgcaacgatagaggtgtc
tgcttcaacggcatgtgtatctgcaatgctggctaccaaggagaggattgtagccagctg
gcttgccccaacaactgccacaacaggggacagtgtgtcaacgggcagtgcgtctgcaat
gtaggctaccagggagaggactgctctgagctctcctgccccaacaactgcctcaaccgg
ggccgctgtgtcaacggacagtgtgtgtgcgatgaagggttcggtggtgaggactgcagc
atcaagatctgcccctcagactgctatggcagtggagattgtgtggatggccggtgtgtc
tgctatgctggcttcaccggtgaggactgcagcgagctgagctgccccaacaactgcctg
aaccgcggacgctgcgttgacgggcagtgcgtctgcgacgagggcttcacaggggaagac
tgcactgagaagcactgtcccaatgactgcctggacaggggatactgcgtggatggcaaa
tgtgtctgcctggagggctacgcgggtgtcgactgctctgaactcacctgccctgataat
tgcaacaacagggggcactgtgttaatgggaagtgcatgtgtgaggagcgatacatggga
gacaactgtggagagctgagctgcctcaacaactgccaggacatgggccgctgtgtgaat
ggacaatgtctctgtgatgagggatacatcggagaagactgctcagaagtttcacctcca
aaggacctgactgtaacagaggtcaccaccgagacagtggatctgacctggaacaatgag
atgctggtgacagagtatctgattgcatatgtgcccactagtcctgggggtctgtaccag
gagttcagagtgcctggagacaagactgctgccacagtcagcgagctggagcccggcatc
gagtacctgatcaacgtctatgccatcctcagcaacaagaagagcatcccaatcagtgcc
agggtggccacaaatctaccggagccagacggcttgaagttcaaatcggtgagggacacc
tcagtagaggtgttgtgggatcagctggacattccctttgatgcctgggagctctatgtc
cgtaacacgaaagaggagaatgggaagatcctgacaacccttccatcctcccagactatg
tatgagcagtcagggcttggtcctggtcaggagtacgaggtctcagtgggcgtcatcaag
aacaataccagaggacctcagtctactaaaatcattaccaccaggattgatggccccaga
caggtagaggttcgtgatgtgacggactgctcaggcttggtcacctggttccagcccgtg
gctcaggtggacggtgtcaccgtgtcctacggccccagctcccaccccacagagaggacc
agcgtggacctatccacctcagacaaacagtacagcatcgacagcctcagcccagacact
gagtaccaggtgtccctgatctctaggaggggagactacaccagtgagccagtctctgag
acattcaccacagacctggacgcccccaaagacctgaagcccttgggccagacagacgac
agtgtcacactggagtggataaacagccgggcagatgttgacagctacagggtgaagtac
agccctatctctgggggttcccatggcgaggaggtgttctcccgtgggtcaggagacagc
actcaggccaccatcactggaataaaaccaggtacagaatacggcattggtgtgactgcc
gtgaagaacgagagggagagcctgcctgccactacaaacgcagccactgatctcgatggg
cccaaggacttggaagtgagcgagtccacagagacaagcatgaccctggtgtggaggaga
cccagagccaagatcaccatctacaggctggtgtacatctccagggacggtcgaagggag
gaggtggaggtccctggaactgccaccacctatgtcctgaccaacctgacccccggtatg
ctgtacaccattaccctggtcgctgagaggggctcaaagaagagcacacccgtaaccctg
tccgcatctacagaggacctggggcctgtggtggccaacctcacagtctctgacgtgaca
tgggacagcttcagtgtgtcctggactcccgaggacggggagtttgagagctttgtcatt
gaggtgacaaacttacaggaaggtttagagagcgtgaacctcaccttgtctggtgatgcc
ttcagcctgggcatttctggcctgagtcctaacacctcgtataggattggcctgtacggg
ctccacaagggctccttccaggagccagtgtataccgaagtcactacaggcctgggcgct
ccaaggggcatccgcttctctgaggtgaccgagtcctcggccatagtccactggaccatg
cctcgtgccagagtggacagctatcgcatcgtctatgtgcccctccaaggaggtagccca
atgacagtgcttgcagatgggactgagacccaggccttgctgcctgacatgttgccaggg
gtgacctaccaggtgaccatattctccatgaagggcctggaggagagtgacccagggaca
gacaccatcaccacatctctggacagacctcagggtctttctgctgtcaacgtcactgac
acgaccgccctgctgctatggcaacccactcgggccactgtcgatggctacgtcatcacc
tacagtgcagattcagggtccccagtgatggagcatgtttctgggaacacagtggagttt
gagatgggctctctggtccctgccacccattacacagttggggtatacgccatgagggag
gcactgaagagtggcaccaccaccaccggattcaccacagatgtggattctcctcgcgac
ctggcagccagtaacgtccagacagacagtgccactctcacttggaagcctccgcgggcc
gacatcaccggatacgtcctcaccttcacctcatctgacagcacagtccgggaagtggtc
ctgagccctacagccacatcatacagcatgactcagctgagtggcactaccgactacaac
gtcaggctacaggccatcgctggagcccagcggagccgccacgtcaccaccgtcttcacc
accatcggagtgttgtacagataccctaaggactgctcacaggctctgctgaatggagac
accacctctggcatctacaccatctacctgggaggagaagagagccagcccatccaggtt
tactgtgacatgaccaccgacggaggtggatggatggtgttcctgaggcgccagagtgga
aagctggagttcttcaggaactggaagaattacactggtggctttggggacattaatgct
gaattctggtttggtctggctaacctccacaagatgacaacagcaggccagtacgagctg
cgtgtggacctgagggacaacggggagtcggcctatgctcagtatgacaaattcacaatc
gcagaaccccgtagccgctacaagatccacataggagggtacagcggcacagcaggtgac
tctatgacttatcaccagggccgacccttctccacgtatgacaatgacaatgacatcgct
gtcaccaactgtgcactgtcctataagggtgccttctggtacaagaactgccatcgtgtc
aaccttatggggagatatggtgacgatagtcacagcaagggtatcaactggttccattgg
aagggacacgagcattcaatacagttcgccgaaatgaagattagaccagtcaacttcaga
aactttgaaagtcgaaggaaaagatcatag
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