Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388268
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Entry
139388268 CDS
T10872
Name
(RefSeq) sorting nexin-27-like isoform X1
KO
K17936
sorting nexin-27
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139388268
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139388268
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Others
Others
139388268
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
139388268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
VirE3
SNX17-31_F2_FERM
SNX17_FERM_C
PDZ_2
USP7_C2
DarA_N
Motif
Other DBs
NCBI-GeneID:
139388268
NCBI-ProteinID:
XP_070990931
LinkDB
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Position
3:13308107..13340156
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AA seq
570 aa
AA seq
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MADVEGEGINSVAPPLVQPSSPNGSGASPTQGTGSCQTVTTVTSGPRLVRIVKSDSGYGF
NVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNSVNVEGATHK
QVVDLIRAGERELMLAVLSVPPQEADCLDPGDDGSAQSCYDYSDKQAVPISVPTYKHAEL
NQERFVMYNVYMAGRQLCSKRYREFAILNQNLKREFANYTFPKIPGKWPFSLSEQQLDAR
RRGLEEYLEKVCSVRVIGESDVMQEFLSDESDENYNGVSDVELRIAMPDKTTVTVRVRKN
CTTDQVYQAVVMTVGMDSITASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTC
LTLRKWLFTTEEEILLNDNQLAVSYCFHQAVDDVKRGFIKAEEKSYQLQKLAEQKKMAMY
LSMLRGCEGYNEIIFPHCSCDSRRKGHVVTAISIHNFKLHACTEEGTLENQVIVFEWVEM
QHWDTDEEGMAFCFQYTRAEKKPRWVKIFTPYFNYLHECVERVFCELKWRKEVEEEAVDK
DNKNCSKEEYLPAVETQKGWRHLGGEIITS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgtcgagggagagggaattaattcggtggcacctccgttagttcagccatcc
tctcctaacggctccggtgccagcccaacgcagggcaccggcagttgccaaacggtgact
accgttacgtcaggcccgcgactggtgcggatagtcaagtctgactcgggatatggcttc
aatgtccggggacaggttagcgaaggaggacaactacggagcatcaacggggaattgtat
gccccgctacagcatgttagtgctgttttaccgggaggtgcagcggacagagccggtatc
tcgaaaggggaccggattctggaagttaatagtgtgaacgtggagggggcgacccataag
caggtggtggatctgatccgtgcgggggagagggagctgatgctggccgtgctgtctgta
cctccccaggaggctgactgtctggaccctggagacgacggctcagcccagtcctgctac
gactacagcgacaaacaggccgtccccatctccgtccccacatacaaacacgctgaactc
aaccaggagaggtttgtgatgtataatgtgtacatggcaggcagacagctgtgctctaag
aggtacagggagtttgctatcctcaaccagaacctgaagagagagtttgccaactacacc
ttccccaaaatacctggcaaatggcctttttccctgtctgaacaacaactagacgctaga
cgcaggggactggaggaatacctggagaaagtgtgttcagtgagggtgattggggagagt
gatgtcatgcaggagtttctgtctgacgagtctgatgagaactataacggcgtatcagat
gtggagttgaggatagccatgcctgataaaaccaccgtcacagtccgagtccgcaagaac
tgtacaactgaccaggtctaccaggctgtggtcatgacagtaggaatggacagcataaca
gccagctactttgctctgtttgaggtcatcaaccactcctttgtgcgtaaactggctcct
aatgagttcccccacaagctgtatgttcagaactacacatctgctgtccctgggacctgc
ctcaccctgcgcaagtggctcttcaccaccgaggaggagatcctgctcaatgacaaccaa
ctggccgtcagctactgcttccaccaggcggtggatgatgtgaaaaggggatttatcaag
gcagaggagaagtcctaccagctacagaaattagcagaacagaagaagatggccatgtat
ctcagtatgttacggggctgtgaaggctacaatgagatcatcttcccacactgctcctgt
gactcccgacgcaaaggccatgtcgtcacagccatcagcatacacaactttaaactgcac
gcctgcacagaggagggaacgttagagaaccaggtgatcgtgtttgagtgggtggagatg
cagcactgggacactgatgaggagggcatggccttctgcttccagtacaccagggcagag
aagaaacctcgctgggtcaagatctttactccctacttcaactacctgcatgagtgcgtt
gagagagtcttctgtgaactcaagtggaggaaagaggtggaagaggaggctgtggataag
gacaataagaactgcagtaaagaagaatatcttccagctgttgagacacagaagggatgg
aggcacctaggaggagagatcatcacctcctaa
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