Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388401
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Entry
139388401 CDS
T10872
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139388401
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
139388401
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THSD1_D3
THSD1_N
THSD1_D2
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CCN
TSP1_CFP_C
PRC2_EED_ins
Motif
Other DBs
NCBI-GeneID:
139388401
NCBI-ProteinID:
XP_070991140
LinkDB
All DBs
Position
29:45595613..45662371
Genome browser
AA seq
1013 aa
AA seq
DB search
MPQGSTPTPLLVFLLATLGYAMAGLHLWPSVHVALSNSSVFLNYDTADHNASSDIRNMTL
TLVDTETNATLLTRTLPANQSEGRLEFNCSCFLYAGTFRFCLEQIDYATANANSNANASV
TDRDWNAVVTTTATWWWSSELQVEWPTFHIAVDRASNQSGSFQVGISTNELFKSCSSGLG
SALFLEVSYLEFNQIGRNSIDKVRARTRHPIKELHSQTVDLLCAFHFTERDFIRVALRSP
HTNQDVKSSGPLYLSRIFSYKLLVDNINSYRSGCEGAISVRLVTPPCALISGKVLLFRDG
GVGSEGKGGTGAGGAGEGGVGAEGPPPSVPLAFHWLTQGENETEFNCSVFDPGRNKYCFR
FVLNFSRSPSPAQTCLVVNRNAESWGVWQAWSVCSVSCGEGVRERVRECLLPSGGGSMQC
TGMVKEQSLCSLEDCTVLPAPSPSLPPPPASSLLGGNLVVVAGISLCLAVILATILVTLW
RKLCRTPQCSSVRRGSMHSPGGRKLSDEASICGNSLQRPSLSDSQGGTGPGLAQNERPNL
GCKPLPQPPPLVIPLVQDPDRLSPSGQKVLPPIFGYRLAQQQLKEMKKRGLKEATQLYHV
SQSPVHDTLLEDSPTSTPTQPGFTLPGLGPNPSPLDLQEEDSNLSRFRITAPFPEHRVPQ
RSSVTLPDRLSPRVELVLGPPVAGYMREGRGGGGGSSQQRDRTADWVEMVERTGLGGMGG
GGVPSNSYQKNPNCRRTSSFHDTKPPPPPAAPCRPHRERSQTQVGPRTRTLPEGSCRTRG
TLETQNPAYPIPEQSTPDWARPKPRPLWPGDDRRRPWVETGCPLFSSNKPKHAENNNTYL
ISDPKHTETNTTTAAMLGSELLSNTELTLERERRGIGDRREGGEDRGERGGTSGIGGPGV
GSRGCPAYLTPDRAERAEHNWNRRGPSPIQRNILARKLREAQSCNTASDQQGRHNQQQQR
QRSSTFSVSASEQRKGRCRSLPLSGDSPYGLTEAEQCMLDLDMTSLYLGEDEF
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgccacagggttccacgccgacaccgctgctcgtcttcctattggccacgctgggatac
gctatggctggcctccacctgtggccctccgtccatgttgcacttagtaacagcagtgtg
ttcctcaactacgacaccgcagaccacaacgcttcctccgacatccggaacatgacccta
actctggttgacacggaaactaacgccaccctgctcaccagaaccctgccagccaaccaa
tcagaggggagattagaattcaactgctcctgtttcctgtacgctggaacattccgcttc
tgcctggagcagattgactacgcaaccgctaatgctaacagtaatgctaatgctagcgta
acggatagagattggaatgcggttgttactactactgccacctggtggtggagctctgag
cttcaggtggagtggccaacctttcacattgccgtggaccgagccagcaaccagtcagga
tccttccaggtggggatctcgaccaatgagctgttcaagtcctgctcctctggcctcggt
tccgccctcttcctggaggtcagttacctggagttcaaccagattggtcgaaatagcatc
gacaaggtccgcgcccgcacccggcacccaatcaaagagctgcattctcagacggtggat
ctgttgtgtgcatttcatttcacagagcgagacttcatcagggtggcgctgcgctcccct
cacacaaaccaggatgtcaagtcatctggccctctctacctctccaggatcttctcctat
aagttactggtggacaacataaactcctacaggtcaggctgtgagggagcgatatctgta
cgcctggtgacccctccctgtgctctgatcagcggcaaggtcctcttattccgggacgga
ggtgtggggtccgagggaaaggggggcacaggggcggggggagcaggtgaagggggtgta
ggggcagagggcccgcccccctccgttccactggcgtttcattggctgacacagggggag
aacgagacagaattcaactgttcggtgtttgacccaggaaggaataaatactgcttcaga
tttgtgctcaacttcagccgctccccgagtccagcacagacctgcctggtggtaaacagg
aacgcagagtcatggggtgtgtggcaggcgtggagcgtgtgcagtgtgagctgtggagag
ggggtgagggagagagtgcgagagtgtctgctgccctccggtggtggaagtatgcagtgc
accggcatggtcaaggaacagtctctctgctcactggaagactgtacagtccttcccgct
ccctctccgtccctcccgcctcctccagcctcctccttactcggtggtaacctggtagtc
gtggccggtatatccctgtgtctggcggtcatcctagcgaccatcctggtcaccctgtgg
cgtaaactctgccggacaccccagtgtagctcggtccgccgcggatcgatgcactcgcct
gggggacgtaaactctctgacgaggcctccatctgtgggaacagcctccagagacccagc
ctctccgacagccaggggggcacagggccagggctagcccagaacgaaaggcctaacctg
gggtgcaaacctctgcctcaaccccctcctctggttattcccctggttcaggacccagat
agactgtctccatcgggacagaaggtgctaccgccaatcttcgggtatcgtctggcccag
cagcagttaaaagagatgaagaagagaggtttaaaggaagccacccagctctatcacgtc
tcacagagccctgtccacgacactcttctggaggactcgcccacctccactcctacccag
ccagggttcaccctccctgggctcggccccaaccccagccccctggacctccaggaagaa
gattctaatctgagccggtttcgtatcaccgcccctttccccgagcacagggtcccacag
cgcagctcggttactctgccagacagactgagccccagggtggagctcgtcctggggcct
cccgtggccggatacatgagagaaggtaggggaggaggtggcgggagctcccaacaacga
gaccgcacggcagactgggtggagatggtggagaggactgggttaggagggatgggtgga
ggaggcgttccctccaactcgtaccagaaaaacccaaactgcagacggacatccagcttt
cacgacaccaagcccccacctcctccagcagccccatgtcgcccccacagggagaggagt
cagacccaggtgggtccccgcaccaggaccctccccgagggcagctgtaggacccgagga
accttggagacccagaacccagcctatcccatcccagagcagagcacccctgactgggcc
aggcccaaaccgcgacccctttggcctggggacgacaggagaagaccctgggtggagact
ggatgtcctctgttttccagtaacaaacccaaacacgctgaaaacaacaacacctacttg
atctctgaccctaaacacacagagaccaacactacaacggcggccatgttaggatctgag
ctgcttagcaacactgaactcaccctggagagggagaggcgggggattggtgatcgaaga
gaaggtggtgaagatagaggagagagaggtgggacttcaggtataggtggaccaggggtg
gggtctcgtggctgccctgcttacctcaccccggaccgggcagagcgggcagaacacaac
tggaaccgtcgaggcccttccccgattcagagaaatatcctggccaggaagctgagagaa
gctcagtcttgcaacaccgcctccgaccagcaggggcgccataaccaacagcagcagagg
cagcgcagctccacatttagcgtgtctgccagtgaacaaaggaaggggaggtgcaggtct
cttcctctgtctggagactccccctatggactgactgaggcagagcaatgcatgctggat
ctagatatgacctcgctatacctgggagaggatgagttctga
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