Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388569
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Entry
139388569 CDS
T10872
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1-like isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04210
Apoptosis
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
139388569
09142 Cell motility
04820 Cytoskeleton in muscle cells
139388569
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139388569
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
139388569
Intermediate filaments
Intermediate filament-binding proteins
139388569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
SH3_2
EF-hand_8
SH3_3
SH3_10
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
139388569
NCBI-ProteinID:
XP_070991405
LinkDB
All DBs
Position
29:complement(3553037..3610117)
Genome browser
AA seq
2511 aa
AA seq
DB search
MATIEIQDLGQQRETSRLPRETLATTSPQRMDTSGVKVLESADDIQERRQQVLDRYRRFK
ELSGVRRQKLEDSYRFQFFRRDADELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEA
EVQANAGAIIKLDETGNLMTSEGHFASETIRTRLEELHRLWDLLLQKTKEKGVRLLQAQK
LVQYLRECEDALDWISDKEAMATSEELGQDLEHVEVLQKKFEEFQTDLAAHEERVNEVNQ
LAGKLSQESHPEAELIVRKQEEVNAAWQRLKGLAQQRQGRLFGAAEVQRFNRDVDETISW
IKEKEQLMASDDFGRDLASVQALLRKHEGLERDLAALEDKVNTLGGEAERLQQTHPQNAS
QIHLKRDELITNWEQIRTLAAERHAHLNDSYRLQRYTADFRDLTSWVTEMKALINADELA
NDVAGAEALLDRHQEHKGEIDAHEDSFKATDEAGQALLNTGHYALEEVKEKLGVLTEEKE
SLLELWEVRRQQYEQCMDLQLFYRDTEQVDNWMSKQEAFLLNEDLGDSLDSVEALLKKHE
DFEKSLSAQEEKITALDEFATKLIQNNHYAKEDVATRRDALLSRRNALHERAQSRRAALE
DSFHLQQFFRDSDELKSWINEKMKTATDEAYKDPSNLQGKVQKHQAFEAELSANQSRIDA
LQKSGQELLDGKHYAADEVSVRMDEVSSQWKKLLEATELKGIKLREANQQQQFNRNVEDI
ELWLYEVEGHLASDDYGKDLTSVQNLQKKHALLEADVAAHQDRIDGITIQARQFQEAGHF
DGDNIKRKQEALVARYDALRDPMAARKQKLSDSLRLQQLFRDVEDEETWVREKEPIAAST
NRGKDLIGVQNLLKKHQALQAEIAGHEPRIKAVTQKGEAMVEEGHFAGEEVKVKLGELNG
RWDTLKGKAGQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGSPDYGKDEDSAEALLK
KHEALMSDLSAYGTSIQALKEQAQSCRQQVAPTDDETGKELVLALYDYQEKSPREVTMKK
GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPTQSSSRENLLDEQGSIGLRQDQIE
NQYGTLLELGEKRKDMLEKSCKKFMLFREANELQQWINEKEGALTNEEVGSDLEQVEVLQ
KKFDDFQKDLKANESRLRDINKVASELESEGLMAEEAHMVQAQEQVMVGSVPGKDDTDSK
NASPWKNVRLAVQTTANFNTIKELNNRWRSLQQLAEERSNMLGSAHEVQRFHRDADETKE
WIEEKNQALNTDNYGHDLASVQALQRKHEGFERDLAALGDKVKSLGETAERLIQSHPEAV
DDIQEKCTELNTAWSSLVARADQRKDKLGNSHDLQRFLSDFRDLMSWINGIRSLVSSEEL
AKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLARGHYASPEIQQKLEALDHER
ADLEKAWVQRRMMLDQCLELQLFNRDCEQAENWMAAREAFLASDDKGDSLDSVEALIKKH
EDFDKAINVQEEKIAALQSFADQLVGADHYAKPEISKRRNEVLDRWRRLKAQMIEKRSKL
GESQTLQQFSRDVDEIEAWISEKLQTATDESYKDPTNIQLSKLLSKHQKHQAFEAELHAN
ADRIRGVIDTGNALIQRGACAGSEDAVQSRLGALDEQWQFLVNKSAEKSQKLKEANKQQN
FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNGQAD
SLTASTAFDPTQVKDKRNAVNGRFAKIKSMAAGRRAKLNESHRLHQFFRDLDDEESWIKE
KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELGAHEPAIQSVQDTGKKLSDDNTIGQEEIE
QRLGQFEEHWTELKDLAAARGQRLEESLEYQQFVANVEEEEAWINEKLNLVGSEDYGDTL
AAVQGLLKKHEAFETDFTVHRDRVNDVCSNGDELINKNNHHVDSISAKMTSLRGKVSELE
RAAAMRKAKLDENSAFLQFNWKADVVESWIGEKENSLKTDDYGRDLSSVQTLLTKQETFD
AGLQAFQQEGITNITALKDQLLAAKHVQSKAIEARHAALMKRWNKLLDNSQARKKKLLEA
QDHFRKVEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNSLEEIRALRDAHEAFRSSLSS
AQADFNQLAELDRQIKSYQVVSNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQEE
NDKLRQEFAQHANAFHQWLQETRTYLLDGIAYRRVVRVFQYEVSDDLSGRSCMVEESGTL
ESQLEATKRKHQEIRAMRSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLG
MRMQHNLEQQIQARNTTGVTEDALKEFSMMFKHFDKEKSGRLNHQEFKSCLRSLGYDLPM
VEEGEPDPEFESILDTVDPNRDGNVSLQEYMAFMISRETENVKSSEEIESAFRALSVDAK
PYVTKEELYQNLSKEQADYCISHMKPYLDSKGREMPSAFDFVEFTRSLFVN
NT seq
7536 nt
NT seq
+upstream
nt +downstream
nt
atggccaccattgaaatccaagacctagggcaacagcgggagacaagccgtctgcctagg
gagactttggccaccacctctcctcagagaatggataccagtggggtgaaagtgctggag
tctgccgatgacatccaggagcgccggcagcaggtgttggatcgctaccggcgcttcaag
gagctgtcgggtgtgcgcaggcagaagctggaggactcctaccgtttccagttcttccgc
cgcgatgccgatgagctggagaagtggatccaggagaagctgcagatcgcctccgatgag
aactacaaggaccccaccaacctccagggcaagctccagaaacaccaggccttcgaggcg
gaggtgcaggccaacgctggagccatcatcaagcttgatgagactggcaacctcatgacc
tccgagggtcactttgcctctgaaaccatccgcactcgtctggaggagctgcatcgtctt
tgggacctgctgctgcagaagaccaaggagaaaggtgttcgtctgctgcaggcccagaag
ctggtgcagtacctgcgcgagtgtgaggatgccctggactggattagtgacaaggaggcc
atggccacctcagaggagctgggccaggacttggagcatgtggaggtgctccagaagaag
tttgaggagttccagacggacctggcggctcacgaggagcgtgtgaacgaggtgaaccag
ctggcgggcaagctgagccaggagtcccaccccgaggcggagctcatcgtccgcaagcag
gaggaggtgaacgccgcctggcagaggctcaagggcctggcacagcagaggcagggcagg
ctgttcggagccgccgaggtgcagcgcttcaacagggatgtggacgagaccatcagctgg
atcaaggagaaggagcaactcatggcgtccgatgactttggccgggacctggccagcgtt
caggccctgctgcgcaagcacgagggcctggagagagacctggctgccctggaggacaag
gtcaacactctgggcggagaggctgaacgtctgcagcagacccacccccagaacgcttcc
cagatccacctgaagagggacgagctcatcaccaactgggagcagatccgcacgctggcc
gccgagcgccatgcccacctcaacgactcctacaggctgcagcgctacactgcagacttc
cgtgacctgaccagctgggtgacggagatgaaggccctgatcaacgctgacgagctggcc
aacgacgtggccggagccgaggctcttctcgaccgccaccaggagcacaagggtgagatt
gatgcccatgaggacagcttcaaagccacggacgaagccggtcaggccttgctcaacacc
ggacactacgccttagaggaggtcaaggagaagctgggtgtcctgactgaagagaaggag
tctctgctggagctgtgggaggtgcgcaggcagcagtacgagcagtgcatggacctgcag
ctcttctacagggacacagagcaggtcgacaactggatgagcaagcaagaggcttttctt
ctgaacgaggaccttggtgactctctggacagcgtggaggccttgcttaagaaacacgag
gactttgagaagtccctcagcgcccaggaggagaagatcactgccctggatgaatttgcc
accaaactgatccagaacaaccactatgccaaggaggatgttgctactcgtagagatgct
ctgctgagccgccgcaacgccctgcacgagcgtgctcagtcccgccgcgccgctctggag
gactccttccacctgcagcagttcttccgtgactcggacgaactcaagagctggatcaat
gagaagatgaagacggccaccgacgaagcctacaaggacccgtccaacctgcagggcaag
gtccagaagcaccaggccttcgaggcggagctgtcagccaaccagagccgcatcgatgct
ctgcagaagtctggccaggagctcctagacgggaagcactacgccgccgacgaggtgtct
gtacgcatggacgaggtcagctcccagtggaagaagctgctggaggccaccgaactcaaa
ggcatcaagctgcgcgaggccaaccagcagcagcagttcaacagaaacgtggaggacatt
gagctgtggctgtatgaggtcgagggccacctggcttcagatgactacggcaaggatctg
accagcgtccagaacctgcagaagaagcacgccctgctggaggctgacgtggctgcccac
caggaccgtatcgatggcatcaccattcaggcgcgtcagttccaggaagccggtcacttt
gacggcgacaacatcaagcgcaagcaggaggcgctggtggcgcgctacgatgccctccgc
gaccccatggccgcccgcaagcagaagctgtcagactccctgcggctgcagcagctcttc
agggacgtggaggacgaggaaacctgggtccgggagaaggagcccatcgccgcctccacc
aaccggggaaaagacctgatcggcgtccagaacttgctgaagaagcaccaggccctgcag
gcggagatcgctggccatgagccccgcatcaaggccgtcacccagaaaggagaggctatg
gtggaggaaggccactttgctggggaggaggttaaggtgaagctgggggagctgaacggc
cgctgggacaccctgaaaggcaaggccgggcagcgcaggcaggacctggaggactcactg
caggcacagcagtacttcgccgacgccaacgaggcagagtcctggatgagggagaaagag
cccatcgtgggcagtcccgactacggcaaggatgaggattcggctgaggccctgctgaag
aagcacgaagccctgatgtctgacctgagtgcttatggcaccagcatccaggctttgaag
gagcaggcccaatcctgcaggcaacaagttgcgcccaccgatgatgagacgggcaaggag
ctggtgctggccctctatgactaccaggagaagagcccccgtgaggtcaccatgaagaag
ggagacatcctcaccctgctcaacagtaccaacaaggactggtggaaggtggaggtgaat
gaccgccagggctttgtgccagcggcctacgtcaagaagctagaccccacccagtcctcc
tccagggagaacctgctggacgagcagggcagcatcggcctccgccaggaccagatcgag
aaccagtacggcactctcctggagctgggcgagaaacgcaaggacatgctagaaaagagc
tgcaagaagttcatgctgttccgcgaggctaacgaactacagcagtggatcaacgagaag
gagggagccctcaccaacgaggaggtgggctctgacctggagcaggtggaggtgctgcag
aagaagtttgacgacttccagaaggacctgaaggccaacgagtctcgtctgagggacatc
aacaaggtggcatctgagctggagtctgagggcctaatggcagaggaggcacacatggtc
caagctcaggaacaagtaatggtgggttccgttcctggcaaggatgataccgattccaaa
aatgcttcaccatggaagaatgtacgcttggctgttcaaacgacggctaactttaatact
atcaaggagctgaacaaccgctggaggtccctgcagcagctggctgaggagaggagcaac
atgctggggagtgcccatgaggtgcagaggttccacagggatgcagatgagaccaaggag
tggatcgaggagaagaaccaggccttgaacaccgacaactacggccacgacctggctagc
gttcaggctctgcagcgcaaacatgagggctttgagagagacctggccgccttgggagac
aaggtgaaatctctgggggagacggcggagcgtctgatccagtcccacccggaggctgtg
gacgacatccaggagaagtgcacagagctcaacacggcctggagcagcctagtggcgcgt
gccgaccagcgcaaggacaagctgggcaactcccacgacctgcagcgcttcctctccgac
ttcagggacctgatgtcctggattaacggcatccgaagcttggtctcctcagaggaactg
gccaaagatgtgaccggggctgaggccctgctggagagacaccaggagcaccgtactgag
atcgacgcccgtgcggggaccttccaggcctttgagcagtttggccagcagctgttggca
cgcggccactatgccagtccggagatccagcagaagctggaggccttggaccacgagagg
gccgacctggagaaggcctgggtccagagacgcatgatgctcgaccagtgcctggagctc
cagctgttcaaccgtgactgtgagcaggctgagaactggatggcagcgcgcgaggccttc
ctggccagcgacgacaagggcgactccctggacagcgtggaggccctcatcaagaaacac
gaggactttgacaaggccatcaatgtgcaggaggagaagatcgctgccctgcagtccttt
gctgaccagctggtcggcgctgaccactacgccaagcctgagatctccaaacgtcgcaac
gaagtcctggacaggtggcgccgtctgaaggcccagatgattgagaagcgttccaagctg
ggcgagtcccagaccctgcagcagttcagccgtgatgtggatgagattgaggcttggatc
agcgagaagctgcagacggccaccgacgagtcctacaaggaccccaccaacatccagttg
tccaagctgctgagtaagcaccagaagcaccaggcctttgaggcggagctgcacgccaac
gcagaccgcatccgtggggtcatcgacacaggaaacgccctcatccagagaggggcctgc
gccggcagtgaggacgcagttcagtcgcgtctcggtgccctggatgagcagtggcagttc
ctggtgaacaagtcagcagagaagagccagaagctcaaggaagccaacaagcagcagaac
ttcaacactggcatcaaggactttgacttctggctatctgaggtcgaggcccttcttgcc
tctgaggactatggcaaagacctggcctccgtcaacaacctgctgaagaaacaccagctt
ctggaagccgacatctctgctcatgaggatcgcctgaaggacctgaacggccaggccgac
agcctgacggccagcacagccttcgaccccacccaggtcaaggacaagcgcaacgccgtc
aacggacgcttcgccaagatcaagagcatggctgccggccgccgcgccaagctcaacgag
tctcaccgcctgcaccagttcttcagggacctggacgatgaggagtcttggataaaagaa
aagaaattgctggtgagttcggaagactatggacgtgatttgacaggagtgcagaatcta
aggaagaaacacaagaggctggaggctgagctgggggcccacgagccagccatccagtct
gtgcaggacactgggaagaagctgtctgatgacaacaccatcggccaggaggagattgag
cagaggctgggccagtttgaggagcactggacggagctgaaggacctggctgcagcaagg
ggacagaggctggaggagtcgctggaataccagcagtttgttgcgaatgttgaagaggag
gaagcctggatcaacgagaagctgaatctggtgggaagtgaagactacggggataccctg
gccgccgtgcagggcctgttgaagaagcatgaggcttttgagactgacttcaccgtgcac
agggacagagtgaatgatgtgtgttccaacggagacgagctcatcaacaagaacaaccac
cacgtggacagcatctcagccaagatgacgtccctgcggggcaaggtgtctgagctggag
agggccgctgccatgaggaaagccaagctggacgagaactctgccttcctgcagttcaac
tggaaggccgacgtggtggagtcctggatcggtgagaaggagaacagcctgaagactgat
gactacggacgagatctctcctctgtgcagacgttgctcactaagcaggagacgtttgac
gctggtcttcaggccttccagcaggagggcataaccaacatcacggccctcaaggaccag
ctgctggcggccaagcacgtccagtccaaggccattgaggcccgccacgccgccctcatg
aagcgctggaacaagctgctagacaactcacaggctcgcaagaagaagctgctggaggcc
caggatcacttcaggaaggtggaagacctgttcctgacctttgccaagaaggcatcggcc
ttcaatagctggtttgagaatgcagaggaggacctgacggacccggtgcgctgcaactcg
ctggaggagatccgggctctgcgcgatgcccacgaggccttccgctcgtcgctgagctcg
gcgcaggccgacttcaaccagctagctgagctggaccggcagattaagagttaccaggtg
gtgtccaacccctacacctggttcaccatggaggccctggaggagacctggagaaacctg
cagaagatcatcaaggaacgagagctagagttgcagaaggagcagagaaggcaggaggag
aacgacaagctgcggcaggagtttgctcagcatgccaacgcattccaccagtggctgcag
gagaccaggacatatcttctggatggcatagcttatcgaagggttgtccgtgtctttcag
tatgaagtcagtgatgatctttccggaaggtcctgtatggtagaagagtccggaaccttg
gaatcacagcttgaggcaaccaagcgtaagcaccaggagatccgggccatgcgcagccag
ctgaagaagatagaggatttgggagcggccatggaggaagccctgatcctggacaacaag
tacacagaacacagcacggtgggcctggcccagcagtgggaccagctagaccaactagga
atgaggatgcagcacaacctggagcagcagatccaggccaggaacaccactggagtgaca
gaggatgccctgaaggagttcagcatgatgttcaagcattttgacaaagagaagtctggc
cgtttaaaccatcaagagttcaagtcgtgtctgcgctcgctgggttacgacctgccaatg
gtggaggagggagaaccagaccccgagtttgagtccatcctcgacactgtcgatcccaac
agggatggcaacgtgtccttgcaggagtacatggctttcatgatcagccgcgaaacagag
aacgtaaagtccagcgaggagattgagagcgccttccgagccctcagcgtcgatgccaag
ccctacgtcaccaaggaggagctctaccagaacctgagcaaggaacaggcagactactgc
atctcgcacatgaagccctacctagacagcaagggccgggaaatgccctcggccttcgac
tttgttgaattcacccgctcgcttttcgtcaactga
DBGET
integrated database retrieval system
