Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388732
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Entry
139388732 CDS
T10872
Name
(RefSeq) GRB10-interacting GYF protein 1-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139388732
Surveillance factors
Other surveillance factors
139388732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139388732
NCBI-ProteinID:
XP_070991704
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Position
29:27727539..27757764
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AA seq
1054 aa
AA seq
DB search
MTAETLNFGPECCLGEDNGRCISNLNLRLRALSRGRSVTSPPPSPALPKSKLADYRYGRE
EMLALYIKDDKPPEDITQDKEFAAILQDEPVQPLALEPLTEEEQRNFSMSVNSVAVLRLM
GKGGGAAPAGVAKGRGGGIRGRGRGEGAFYQRAPGGPDDGEVGFGRGREMLRSQSWDDRA
ERPKFEKPIRRAEVVRPGFEEAGPLGRKDSWRADSGNWRTLREEEEEAAAAAGGGEQPAW
RVAGTRRDDGGPRSAGWRDHGGRRKFEFDFRDSEGPRREDDRDGLPEWCTDEEDGEMGTF
DSSGAFMCFKKGSKGTITEEDLEFEALEEDENGQEVKDNGQEGKDNYKDNYTDGDECEGA
CEGVVKYRTPSPPAVSAPPSSDPLPAPCAPEAPLTPISHPSKTNHVPTQGSSPPGSGAQL
SPDPSSSTTTFSSLMPPPSFGSLLPSTGGEVEEDEGMKHLQQEAEKMVASLQDTSLEEEC
FTQALQESHNITSQSLTHPAPHSHTHTAGHTHSHSAHRDCALPLSHEAAMKWFYKDPQAE
IQGPFSTVEMCEWFQAGYFSMTLLVKRGCDEGFQPLGEVIKMWGRVPFSPGPSPPPLLVR
QPPPPRGSSGNMDQELLKKQLEQAATAALYQQLQIRFQHMNRSGESSMMNRSMSVPDNGS
MWDMRTSASQQSGGEANLWDLTMSHSTQGPSLEQLQKLQDRREAELRAKREEEERKRREE
KRRQQEEQKRREEEELYRRKQQCRQQQELILKLLQQAQPGGPGCISGSGTVWSGPQVSAL
SKQGKSLSLLELETERLLKQQAQHQRTQQQRDRHGGLSMGQWGEGSVGMWSGGGMEPKGS
SGGMGVWEEAVKNQNSLRNMGMKNSRSSPSLSEQYMLRKKRTEEEDKLLKLLQGMKPQDG
FTTWCEQMLHALNTSANNSPSSSLDVATIVAYLKEVESPYEVLDFIRSYLGDTVEAKEFA
KQFLERRAKQKANHQRQQQQLSKEVPGLSVNNFPLQSMFQAAQMGKGGMYDSQAAKMKKK
QTMMLHSDPSILGYSFLGAGDRMSLGEMETVEDY
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaaacacttaacttcggcccagaatgttgtctaggggaagataatgggcga
tgcatatccaacttaaacttgaggctccgtgcactatccagagggcggagtgtgacgtcc
ccccctccctctccagcattgccaaagtccaagctggccgattaccgctatggtcgtgag
gagatgctagcactttatatcaaagatgacaaacccccagaggatatcacgcaggataag
gagtttgctgctatcttgcaggatgagcctgtgcagcctttggcactggagcctctaact
gaggaggagcagagaaacttctccatgtctgtgaacagtgtggctgtgctgaggttgatg
ggaaagggaggcggggccgcccctgcaggtgtggccaagggtcgtggaggaggcatcaga
gggagaggaagaggtgaaggtgcattctaccaaagagctcctggaggtcctgatgatgga
gaggtgggcttcggtcgtggccgagaaatgctccgcagccaaagctgggatgaccgagct
gagaggcccaagtttgagaagccaatcaggcgtgctgaggtagtgcgtccagggtttgag
gaggcgggacctcttggcaggaaggactcctggcgtgccgacagtggtaactggcgtacc
cttcgggaggaggaggaagaggcagcagcagcagcaggagggggagagcagccagcctgg
agagttgcaggaacccgccgtgatgatgggggtcctcggtctgcaggctggcgtgatcat
ggcggccggaggaagtttgagtttgacttccgtgacagcgagggcccccgcagggaggac
gacagggacggccttcctgagtggtgcactgatgaagaggatggagagatgggcaccttt
gactcctcgggggccttcatgtgcttcaagaaaggctccaagggcaccatcactgaagag
gatctggagtttgaagctctagaggaagatgagaacggtcaggaagtcaaggacaacggt
caggaaggcaaggacaactataaggataactacactgacggagatgagtgtgaaggagca
tgtgagggggtggtcaagtacaggactccatctcctcctgctgtctcggcccctccctcc
tcagaccctctccctgccccctgtgccccagaggctcccttgacacccatctcccacccc
tccaaaaccaaccacgtgcccactcaaggcagctcacctccagggagtggtgctcagctc
agtccagacccttcctcctctaccaccactttctccagcctgatgcctcctccctccttt
ggatctctcctcccatcaacagggggagaagtggaggaggacgagggcatgaagcacctg
caacaggaggctgaaaagatggtggcatctctgcaggacacatcccttgaggaggagtgt
ttcactcaagcactgcaggagagccacaacattacctcccaatctctcacacacccagcc
ccacactcacacacacacaccgctggacacacacactcccactctgcccatagggactgt
gccctgcccctctcccacgaggcagccatgaagtggttctacaaggacccccaggcagag
atccaaggtcccttctccactgtggagatgtgtgagtggttccaggcaggctacttctcc
atgacactgctggtaaagaggggttgtgatgagggcttccagcccctgggtgaagtcatc
aagatgtgggggcgcgtgcccttctcccccggcccctcccccccacccctgctggtgaga
cagcctccaccacctcgggggtcctctggcaatatggatcaggagctgctgaagaaacag
ttagagcaagcagccactgcagctctataccagcaattgcagataaggtttcagcacatg
aacaggagtggggaatctagcatgatgaacaggtccatgtcagtaccagataatgggtct
atgtgggacatgcgtacctcagcctcccagcagtcaggaggtgaggccaacctatgggac
ttaaccatgagtcattccactcaggggccatctctggagcagctacagaagctccaggac
cggcgtgaggctgaactcagggccaagcgagaggaggaggagaggaagcggagggaggag
aagaggaggcagcaggaggagcagaagaggcgtgaggaggaggagctatacaggcgtaag
cagcagtgtcggcagcagcaggagctgatcctgaagctgctgcaacaggcccagcccggg
ggcccagggtgtatctctgggtcagggactgtgtggagtggcccccaggtctcagcgctc
tccaagcaaggcaagagcctcagcctgctggagctggagaccgagaggctgctcaaacag
caggcccagcaccagaggacccagcagcagagggacaggcatggaggcctgtctatgggt
cagtggggtgaggggtctgtgggcatgtggtctggtgggggcatggagcccaaaggcagc
tctggaggtatgggtgtctgggaggaggctgtgaagaaccagaacagcctccgcaacatg
ggcatgaagaacagccgcagcagcccctctcttagcgagcagtacatgttaaggaagaag
cgtacagaggaggaggacaaattgctgaagctgctgcagggcatgaaaccccaggacggc
ttcaccacctggtgtgaacagatgctgcacgcgctcaacacctccgctaacaactccccc
tcctcgtccctggatgtagccaccatcgtggcctatctgaaggaggtggagtctccctac
gaagtccttgactttatccgctcctacctgggcgacactgtggaagccaaagagtttgcc
aagcagttcctggagcggcgtgccaaacagaaagccaaccaccagaggcagcaacagcag
ttatcaaaagaagttccaggactgtccgtgaacaactttcctctacagtccatgttccag
gcagcccagatggggaagggaggaatgtatgacagccaagctgcaaagatgaagaagaaa
cagaccatgatgcttcactccgaccccagcatcttaggatattcattcctgggcgcaggg
gacaggatgagcttgggcgagatggaaacagtggaagattattga
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