Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388759
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Entry
139388759 CDS
T10872
Name
(RefSeq) high mobility group protein B1a isoform X1
KO
K10802
high mobility group protein B1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03410
Base excision repair
ocla04140
Autophagy - animal
ocla04217
Necroptosis
Brite
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
139388759
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
139388759
MMR (mismatch excision repair)
Other MMR factors
139388759
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
139388759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139388759
NCBI-ProteinID:
XP_070991767
LinkDB
All DBs
Position
29:complement(38700906..38707064)
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AA seq
346 aa
AA seq
DB search
MRRKELSEEFRDKVVDRHRLGEGYKKISHTLSIPLGTVRSIIKKWKVYGTTETLPRSGRP
SKISSWAKRILALELTMRPTASLKELQSSMAEMGENVHESTIARSFANCSRYGRSERRRT
LQKANSNFQSRAEFAEKYLDIEMGKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFS
EFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKKFKDPNAPKRPS
SAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDI
TAYRNKGKVPVSMPAKAAAPAKDDDDDDDDDDDDEDDDDDDDEDDE
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcaaagagctttcagaagagttcagggataaagttgtagatcggcacagatta
ggggaaggttataagaaaatttcccatacattgagtatcccattgggtacagtcaggtca
atcattaagaagtggaaggtgtatggcaccactgagactctgcccagatcaggacggcct
tccaaaataagcagttgggcgaaaaggattcttgctctggaactcaccatgaggccaact
gcctctttgaaagagctgcagagttccatggctgagatgggagaaaatgtccatgaatca
actatagctcgatcattcgccaactgtagccggtatggccgatcggaaagaaggagaaca
ttacagaaagcaaacagcaatttccaatcacgtgcagagtttgcagaaaagtatttagat
attgagatggggaaagatccaaggaagccgaggggcaagatgtcctcctatgcctacttt
gtccagacctgtcgggaggagcacaagaagaaacacccagaagcttccgtcaacttctca
gagttctccaagaagtgctctgagagatggaagaccatgtccgccaaggagaaggggaag
tttgaggatctggccaaactggacaaggtgcgatatgagagggagatgaggagctacatt
cctcccaagggagagaagaagaagaagttcaaggaccccaacgcccccaagagaccatcg
tctgcgttcttcatcttctgcgctgacttcagaccccaggtgaagggggagaccccgggc
ctgtctatcggtgatgtggccaagaagctgggagagaagtggaacaacctaacagcggag
gacaaggtaccctatgagaagaaggcttccaagctgaaggagaagtacgagaaggacatc
actgcgtaccgcaacaagggtaaggtgccggtcagcatgccagcgaaggccgctgcaccc
gccaaggacgatgacgacgacgatgatgacgacgacgatgatgaggatgacgatgatgac
gacgatgaagatgacgagtag
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integrated database retrieval system
