Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389435
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Entry
139389435 CDS
T10872
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X1
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139389435
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
139389435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
Homeobox_KN
HTH_5
Motif
Other DBs
NCBI-GeneID:
139389435
NCBI-ProteinID:
XP_070992291
LinkDB
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Position
30:13573390..13580707
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AA seq
557 aa
AA seq
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MEGEERKGEAGPGPGRLSALQEQLIWALLGSGLSREVLVHALGELERERVTPGAEKGDRG
DGESSEEGEMDFPPPIFQELEALAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQHNLP
QREVVESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVRKQGEISQQFTNARHALGSGEE
QGEDVRKGRRNRFKWGPASQQILFHAYERQRNPSKEEREGLVEECNRAECLQRGVSPSQL
AGLGSNLVTEVRVYNWFANRRKEEAFRHKLALDMPYNSQSASSTNHTLSHSPEQGMKYSQ
QITCDNLGSSRGHNGDRGLGGRLASPIQLEPSHTLLETHHHKPVSGGGPLPPVSTLTSLH
SLSASPAPHHGLIMTSLPSVMSLGESSLLIGQTVPVINNVGGGFTTLQPISFQQQLHSTS
QQQLTQQFQSHMGHHSPFMATMTQLPCHMYSKSDMSHYPPSSLLSQAMVITDSSSLGTLT
SLTTVRQILTTDPEEQTDQPIQDSLHLQSPSPVPVSSGNLQLYPPSQSSETHPPHRLSSP
PADINSYIPAQMVSTAQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagaggaaaggagaagcagggcccggccctgggcgtctgtctgctctc
caggagcagctgatctgggctctgctgggctctggactgtcccgggaggtcctggtccat
gccctgggagaactggagcgagagagggtcacccctggagcagagaagggggacaggggg
gatggcgagagttcggaggagggagaaatggattttccaccccccatattccaggagctg
gaggccctagccccagaggaggcagccaggcagagggctctggtcgaccaactgcttcag
gaggatccatggcgcgtggcaaaactagtgaagagctacatgcagcagcataacctcccc
cagagagaggtggtcgagtccacaggcctcaaccagtcccatctctcccagcacctcaac
aaaggcacgcccatgaagaaccagaaacgggctgctttgtacagctggtacgtcaggaag
cagggcgagattagccagcagtttactaatgccaggcatgcccttgggtctggagaggag
cagggagaggatgtgaggaagggacgtaggaacaggttcaaatggggacccgcctcccag
caaatcctcttccacgcctatgaacgacagaggaacccaagcaaagaggagagagaggga
ttagtggaggagtgtaacagggctgagtgtcttcagaggggtgtgtctccgtcccagctg
gctggcctgggctctaacctggtgacagaggtacgagtgtacaactggttcgctaaccgc
cgcaaggaggaggccttccgccataaactggctcttgatatgccttacaacagccaatca
gcaagctccaccaaccacacactctcacacagccctgagcaaggcatgaagtatagccag
caaatcacatgtgacaatctggggtcatcgaggggtcacaatggagacagaggcttgggg
ggccgcctggccagccccattcaactggagcccagccacacactcctggaaacacaccat
cacaaaccagtatcaggtggtggccccttgcccccagtcagcaccctgacatcactgcac
agtctgtctgcctcgcctgctccccaccatggactcatcatgacctccctgcccagcgtc
atgagtctgggagagtcttctctcctcataggtcaaaccgtacctgtcatcaacaacgtg
ggaggcgggttcaccacccttcagccaatctctttccagcagcagcttcattccacttcc
cagcagcaactcacacagcagttccagagtcacatgggccaccacagtcctttcatggca
accatgacacagcttccatgtcacatgtacagcaagtctgatatgtcccactaccctccg
tccagcctactgtcccaagcaatggtcatcactgacagcagcagccttggaacactgacc
agtctaaccacagtcagacagattctgaccacagaccctgaggagcagacagaccaaccc
atccaggactccctacacctgcagtccccttcacctgtgccagtttcctctgggaattta
cagctgtatcctccatctcagtctagtgaaactcatccacctcaccgcctctcctctccg
ccagcagacatcaactcctacattcctgcacagatggtctctaccgcacagtag
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