KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389455
Entry
139389455         CDS       T10872                                 
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420  Nucleotide excision repair
ocla04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    139389455
  09124 Replication and repair
   03420 Nucleotide excision repair
    139389455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocla04121]
    139389455
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139389455
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     139389455
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      139389455
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WDR55 ANAPC4_WD40 NBCH_WD40 WDR90_beta-prop_4th WD_LRWD1 WD40_RFWD3 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 139389455
NCBI-ProteinID: XP_070992324
LinkDB
Position
30:30666961..30684980
AA seq 412 aa
MLGFLTARQAGLDDPLRLRRAESTRRVLNLELNHDRDVDRIHSNGVNTIDIEVIEGRYML
SGGADGVIVVYDLENNSRKPQYTCKAVCTVGRSSRYVHRFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEVFQFEGNVYCHHMSPIARKHSLIAVGTKDQKVQLCDLKSGSRIQ
VLQGHRGEVLSVRWSPRYEHILATASTDSRVLVWDVRRASGSLFSLDQHNGDKSKASSEA
VNTAHNGRVNGLCFTVDGLYLLTTGTDDRMRLWNSANGKNTLVNYGKVSNESRKGLKITV
SRSCSPEFVFVPCGSSVAVYTLHTGELVTMLRGHYNNVDCCQFHPDYQRRTRSVSCSGGV
FEELYSGGKDCNILAWVPVVRPPDVEEGTAVKGGSQATVNPAFEDAWSSDED
NT seq 1239 nt   +upstreamnt  +downstreamnt
atgttgggttttctaacagcaagacaggctggacttgacgacccacttcgtctgagacgg
gcagagtcaacacggagggtcctcaatttagagctgaatcatgacagagatgtggatcga
atccatagcaatggcgtaaacaccatagacattgaagtcattgagggcagatacatgcta
tctggaggggcagatggggtgattgtggtgtatgacctggagaacaacagcaggaaaccc
caatacacctgtaaagcagtctgcactgtaggcaggtccagtcggtatgtccacaggttc
agtgtagagacagtgcagtggtacccacacgacacaggcatgtttgtctccagctcattt
gacaaaaccatgaaggtctgggacactgagacactaaagcccgctgaagtgttccagttt
gaaggaaacgtctactgtcaccacatgtcccccattgccaggaaacacagcctcatcgca
gtgggtaccaaagaccagaaagtacagctctgtgacctgaagtctggctcacgcatccag
gttttgcagggtcacagaggtgaggtcctatctgttcgatggtcgccaagatatgagcac
attttagctacagccagtactgacagcagggtgttggtgtgggatgtgcgtcgggcctca
gggagcctgttctctctggatcaacacaacggggacaagtccaaggcctcgtcagaggca
gtgaacacagcccataatggaagggtaaatggcctctgcttcacggtcgacggcctctac
cttctcaccacgggaacagacgaccgcatgaggctgtggaacagtgccaatggaaaaaac
acactggtgaattatgggaaggtgagtaacgaaagccgtaaagggttaaagatcacagtg
tctcgtagctgcagcccggagtttgtgtttgtaccttgtggcagctcagtggcggtgtac
actctacacaccggggaactcgtaaccatgctgaggggacactacaacaacgtggactgc
tgccagttccaccccgactaccagcgcaggacgagatctgtgagttgcagtgggggtgta
tttgaggagctgtacagcgggggtaaagactgtaacatcctagcctgggttcctgttgta
cgaccaccagacgtggaggaagggaccgccgtcaagggtgggagccaggctacggtgaat
cctgcttttgaagacgcatggagcagtgatgaggactga

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