Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389472
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Entry
139389472 CDS
T10872
Name
(RefSeq) synaptic vesicle glycoprotein 2C-like
KO
K06258
MFS transporter, VNT family, synaptic vesicle glycoprotein 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139389472
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139389472
Transporters [BR:
ocla02000
]
Major facilitator superfamily (MFS)
Protein transporters
Vesicular neurotransmitter transporter (VNT) [TC:
2.A.1.22
]
139389472
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFS_1
LD_SV2
Sugar_tr
MFS_2
Pentapeptide_3
Pentapeptide_4
Pentapeptide
DUF6077
Motif
Other DBs
NCBI-GeneID:
139389472
NCBI-ProteinID:
XP_070992358
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All DBs
Position
30:23219043..23281633
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AA seq
737 aa
AA seq
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MDDSYDNRTSLVKGAKEIAKEAKRHAVKKVNKVVDSATDEYSQRKYSRFEDEVDEGDDFH
HNPLGQDGGYNDNDQASDASDATEGHDDEDEIYEGEYQGIPAAGDRKAREGQVALGQPVT
DSLRERKELEKERQADEEELAQQYELIIQECGHGRFQWQLFLVLGLALMSDGVEVFVVGF
VLPSAETDMCALGGSNSRSGWLGSIVYLGMMVGAFFWGGMSDKMGRRQCLLICMCVNGFF
AFLSSFVQGYGMFLLCRVIAGFGTGGVVPIVFSFFAEVLSREKRGEHLSWLCMFWMIGEI
YASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVVVCALPCVCAVVALTFMPESPRFYLEVG
KHDEAWMILKQIHDTNMRARGQPEKVFTVNRIKIPKHLDELVEMKSESGNAVSKALFRSK
TELRGILVNFMKCFDYPLKENTIKLAIVWFTLSFGYYGLSVWFPDVIKHLQADDYASKVK
IHSNERIEDFTFNFTLENQIHTNGVFISDRFLNMKLKSVTFIDSTFRNCYFDDVTSVGSY
FRNCTFIEAFFYNTDIDESKLIDGTEVINSSFHHNKTGCQMTFDDDYSAYWVYFINFLGT
LAVLPGNIVSALLMDKIGRLSMLGGSMVLSGISCFFLWFGTSESMMIFMLCLYNGLSISA
WNSLDVVTTESFPTDRRGTGFGFCNALCKLAAVLGNVIFGSLVGITKAIPILLASSVLVC
GGLVGLRLPDTRANVLM
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagctacgataacaggacttccttagtgaagggggccaaggaaattgccaag
gaggccaagcggcacgccgtgaaaaaggtcaacaaggtcgtggacagcgccacagacgag
tactcccagcgcaaatacagccggtttgaggacgaggtagacgagggggacgactttcac
cataatcccctggggcaggatggaggctacaatgacaatgaccaggccagtgatgccagc
gatgccacagagggccatgatgacgaagatgagatttacgagggggagtaccaggggatc
ccagcggctggagacaggaaggccagggaggggcaggtggctctggggcagcccgtcaca
gacagcctgagagaacgtaaggagctggagaaggagaggcaggcggacgaggaagaactg
gcccagcagtatgagctgatcatccaggagtgtggccacggcaggttccagtggcagctg
ttcctggtgctgggcctggccctcatgtcggatggggtggaggtgttcgtggtggggttc
gttctgcccagcgccgagacggacatgtgtgctctgggtggctccaactccagatctgga
tggctaggcagtattgtgtacctgggaatgatggtgggggcatttttctgggggggaatg
tcagacaagatgggccgcagacagtgtctgctcatctgcatgtgtgtgaacggcttcttc
gccttcctgtcctccttcgttcagggctacggcatgttcctgctctgccgcgtgatcgca
ggctttggaacagggggggttgtgcctatagtcttctccttttttgcggaggtgctgtcc
agagagaagagaggggagcacctgagctggctgtgcatgttctggatgattggagagatc
tatgcttcagccatggcctgggccattataccacactacggctggagtttcagtatgggt
tcggcctaccagttccatagttggagggtgtttgtggtggtctgcgccctgccctgtgtc
tgtgctgtggtggctctcacctttatgcccgagagccccaggttttacctggaggtgggg
aagcatgacgaggcttggatgatcctcaaacagatccatgacaccaacatgcgagcgcgt
gggcagccggagaaagtcttcaccgtgaacagaatcaagatccccaagcatctggatgag
ctggtggagatgaagtcagagtcggggaacgcagtctccaaggccctcttcaggtcaaag
acagagctacgtgggatcttggttaactttatgaagtgttttgactaccctctgaaagaa
aacactatcaagctggctattgtgtggtttacactgtcatttgggtactacggcctgtct
gtgtggttccctgacgtcatcaagcatcttcaggcagacgactacgcctccaaggtgaag
atccacagcaacgaacgcatcgaggacttcaccttcaacttcaccctggagaaccagatc
cacaccaacggggtcttcatcagcgacagatttcttaatatgaagttgaagtccgtcacc
ttcattgactccaccttccgtaactgctactttgacgacgtgacgtccgtgggatcctac
ttccggaactgtaccttcatcgaggcgttcttctacaacactgacatcgatgaatcaaaa
ctgatagacggcacagaggtgatcaacagctcgttccaccacaacaagacgggctgtcag
atgacgtttgacgacgactacagcgcctactgggtctactttatcaacttcctgggaact
ctagctgttctacccggcaacattgtttctgcactgctcatggataagattggacgcctt
tcaatgttaggtggctccatggttctgtcagggatcagttgtttcttcctgtggttcggc
accagtgagtcgatgatgatcttcatgctgtgcctttacaacggcctgagcatatcagcc
tggaactcactggacgtggtcaccacagagtccttccctacagacaggagagggacaggt
tttgggttctgtaatgctctgtgtaagttagctgccgtgttggggaatgtgatctttggt
tcgctggttggcatcaccaaggccatccccatcctcctggcctcatctgtgctggtgtgt
ggaggtctggtggggctccggctgcctgatactcgggccaacgtcctcatgtag
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