Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389513
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Entry
139389513 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03410
Base excision repair
Brite
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
139389513
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
139389513
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
139389513
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
TbpB_A
NOMO1-like_2nd
Motif
Other DBs
NCBI-GeneID:
139389513
NCBI-ProteinID:
XP_070992435
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All DBs
Position
30:23800334..23807670
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AA seq
226 aa
AA seq
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MIQTGRENVKLANYERNVNRAIQKYNAYRKAASVISKYPQKIKIGEEAKKLERVGKEITK
KIDEFLQTGTLKKLEKIRNDDTSSSINFLTRVTGIGYVFCFVCVESSGDIEILLTHPNYT
SMDEKQPKLLHAVVEHFESIVFITDTLSKKDTKFMGVCQMQQNDEEEYLHRHIDIRLIPK
GLYYCGVLYFTVSDIFNKNMRTPALEKGFTLNEYTIXPVEVTDPSV
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgatacagaccggcagggagaacgtcaaattggccaactatgagaggaatgtcaacaga
gctatccaaaagtacaacgcctacaggaaagcagcttcagtgatctccaagtacccccag
aagatcaaaattggagaagaggccaagaaactggagagagttggaaaagagatcactaag
aagatagatgagtttttacaaacaggaacactcaagaagttggaaaagattcgtaatgat
gacaccagctcatccatcaacttccttaccagagttactggtattgggtatgtcttctgc
tttgtttgtgttgaatccagtggggatattgagatcttgctgacgcacccaaactacacc
tctatggatgagaaacagcccaaacttctccatgccgtggttgaacattttgagtccatt
gtgttcattacagacacactgtccaaaaaagacaccaaattcatgggagtctgccagatg
cagcaaaatgatgaagaggaatatcttcacaggcacattgatatcaggttaattcctaag
ggcctgtattactgtggtgtgctgtatttcactgtcagtgacatcttcaataagaacatg
agaactcccgctctggagaaaggcttcaccctcaatgagtacaccatctagccagtggag
gtcactgatccaagtgtctag
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