Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389739
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Entry
139389739 CDS
T10872
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139389739
Pattern recognition receptors [BR:
ocla04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
139389739
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
TIR
LRR_14
TIR_2
LRR_9
DHU1_N
COG3_N
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
139389739
NCBI-ProteinID:
XP_070992764
LinkDB
All DBs
Position
3:complement(17496524..17507155)
Genome browser
AA seq
975 aa
AA seq
DB search
MAGLKYKILVSVAIVLHIAQFTVGYSFRNCTEDPNSNHTTFLCIRHQAKNISAIIGDLPP
YATTIIISINLIKHIPDNSFVHLPNLRTLQIDNNHLETIDNQAFQNMSQLKSLNLSLNKI
SNLSSSVFQDLKNLVNLSLNNNSVIRLPPGIFSSLSNLDVLTLRQNYLNNFSAVAESVTH
LSKLTKLDLCNNYLTSLHHSNHTDLPESLTTLYLCKNKLVTLACEWGFLSHVLLLDLSYN
DQLPSRAFQGLDLRKLNYMRLRSTNVTVPELLNVSNVRGGNIDFSGMGLKTDNLLMELCS
LLSTKVKFVKKLSLGSNGILSLRKNTLSNCPPIRGLLDLSFNQLKKVRCLHFLKGQDQIK
KFTAEKNHLTSLMSCNRQNLSFPNLTDLSYRYNRILKVNSFAFHHTPNVKTLQLNINIIA
YLDHKAFSGLTNLVTLRLDNNLLTDLYQDSFEDLHSLEILNLRNNQIAVLFNKTFHSLKH
LHILDLGGNKITHFEESAFVGLDNLANFYLDGNNLKQIDSSKFKPFHATLEVLDLHGNQV
SFSSKRTNSPFVNLTKLRNLKLDAQMPHGLNMLPYAFFRGLNSLQSLYLTDNHIFSFAAD
TFDDLTNLTFLSLDNSCAGVMQLQPGVFKNLRKLSKLSARNMGIQSFSKEVFGNLTELQI
LLLNQNVMQSLDVNVLEALPKLRYLDLRNIPLSCTCLNSDLQNWTLTNQRVQLVLLYSLQ
CQDKKLQKSFYNFDTNVCYLDLGEYLFATTTTVILLLTIIPLLYTKLYWKLKYSYYVFRS
WFGQHWRRLREKEEHSKYDAFISYNSADEPWVLDQLLPNLEGNGASFRLCLHHRDFELGR
NIVDNIVSAVYSSRKTICVVSRHFLCSEWCSLEIQLASYRLFHELRDVLLLIFLEPIPER
QLSAYHRMRKVMLKKTYLQWPGSDCTDPVKAQELFWNHLRRALRSGSSRFEEEDEGREEY
FNQPPTDDDNYYLMP
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggccgggttaaaatataaaatattagtatcagtagcaattgtccttcacattgcccag
ttcaccgttggctatagcttcaggaattgcactgaggacccaaactcaaaccacacaaca
ttcctttgtatacgtcaccaggcaaagaacatatctgccattataggtgacctgccaccc
tatgccaccacaattataatctccataaacctgataaaacacatacctgacaatagcttt
gttcaccttcctaacctcaggacacttcagattgacaataaccatctggagaccatagac
aaccaggcattccaaaatatgagccaactgaagagcctaaacctgtccttgaacaaaata
tcaaatctcagctcctctgtgtttcaagacctcaaaaaccttgtcaacctgtcactaaat
aataactcagtgattaggctccctccaggtattttctcctcactctccaatctggatgtc
ctcacattacggcagaactacctgaacaacttctctgcggtggcagaatctgtgactcac
ttatcgaagctgacgaaactagacctgtgcaataactatctaacgtccctccatcattct
aaccatacagacctaccagagtccctcaccaccctctatctctgtaaaaacaaactggtc
actttagcatgtgagtggggattcctcagccatgtactactgctggatctatcctacaat
gaccagctcccttcaagggctttccaaggtctggacttgcggaagctaaactacatgcgt
ttgcgttcaaccaatgttacagtgccagaacttttgaatgtcagcaatgttagaggtgga
aacatagacttctctggtatggggttgaagactgacaatctgctcatggagttatgcagc
cttttgagtacaaaggtcaaatttgttaaaaagctgagtctgggaagcaatgggattctg
tcattgcgaaagaacacactttcaaactgtccaccaatccgaggtttattggacctttcc
tttaaccagttgaagaaggtaagatgcctccactttctcaaaggacaggatcaaatcaag
aaattcacagcagagaaaaaccacctcacctccctaatgtcctgcaacagacagaacctc
tctttcccaaatctgacagatctgagctaccgttacaatcgcatactcaaagtcaactct
tttgctttccaccacacaccaaatgtgaagaccctacaactcaacataaacataatcgcc
tatcttgaccataaggctttcagtgggctgactaatcttgtcacactgcgtctggacaat
aacctcctgaccgatctgtaccaggatagctttgaagatctgcatagcctggaaatactt
aacctacgtaacaatcagatagctgttcttttcaacaagactttccattcactcaaacac
ctgcacattttggatcttggagggaacaaaatcactcattttgaagagtcagcctttgtg
gggctcgataacctggccaatttttaccttgatggaaacaatctcaaacagattgacagc
tccaagtttaaaccattccatgctactcttgaagttcttgatctacatgggaatcaggtt
agcttctcttctaaacgtaccaactctcctttcgtgaatctaacaaaacttcgcaacctc
aaactagatgcgcagatgccccacggcctcaacatgctgccttatgcctttttccgtggt
ctcaactccctccaatcgctctaccttaccgacaatcacatcttcagcttcgcagcagac
acttttgacgatctgaccaacttgactttcctctccttggacaactcctgtgccggggtg
atgcagctgcagccgggtgtcttcaaaaacctgcggaaattgagcaagctcagtgcaagg
aacatgggcatccagtccttctcaaaggaggtttttgggaatctgacagagctgcaaatc
ttgcttctcaaccaaaacgtaatgcaatccttagatgtgaatgtgctggaggctctacct
aaattgcgctacctggacctgcgcaacattcctcttagttgcacctgcctcaacagtgac
ctgcagaactggactttgactaaccagagagtccagttagtcttactatacagtctacag
tgccaagataaaaaactccaaaaaagcttctacaacttcgacaccaatgtttgctacctg
gacctgggagagtacctttttgccaccacaaccactgtgattttactgctgactataatc
ccacttctctacaccaagctgtattggaaactgaagtatagctattatgtgttccgctcc
tggttcggccaacactggcgcaggctgagggagaaagaggagcacagcaaatacgatgct
ttcatctcctataactcggcggacgagccctgggtacttgaccagctacttccaaacctg
gagggcaacggagcctctttcaggctgtgcctgcaccaccgtgactttgagctgggtcgc
aacatcgtggacaacatcgtctccgccgtgtacagcagccgcaagaccatctgcgtggtt
agtaggcacttcctgtgcagcgagtggtgttccctggagatccagctggccagctacagg
ctcttccatgagctccgggatgtgctcctgctcatcttcctggaacccatccctgaaagg
cagctctcagcttaccaccgtatgagaaaggtcatgttgaagaagacctacctgcagtgg
ccggggtcagactgcacagacccggtcaaggctcaggaactgttttggaaccatctgagg
agggcgctgaggagtgggagcagcaggtttgaagaggaggatgaggggagggaggaatac
ttcaatcagccaccgacggatgatgataactattacttaatgccttaa
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