Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389776
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Entry
139389776 CDS
T10872
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Proteoglycans [BR:
ocla00535
]
Cell surface proteoglycans
Others
139389776
Lectins [BR:
ocla04091
]
C-Type lectins
Others
139389776
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GFIT
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NCBI-GeneID:
139389776
NCBI-ProteinID:
XP_070992822
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Position
30:43048497..43135042
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AA seq
2427 aa
AA seq
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MENMEFPIRNSKKRCFYALLWSLVSQLTLGASFYGDGYVQLKAVESSNRNSLRVRFRTSS
PRGLLFLAAGHTDYLLLELNSGRLQVKLDLGSGECLLRSESSTQLNDLAWHTAELLHDRH
NVTLTVDQHSHTSLRMPGHGSQKQELSIQEGLYIGGSGGLDKLYLPSDLTGFRGCMDKVV
FNEHDMLSSLRPYAGFKSVYEVSLGCSPQFFANEEDPVSFFSSRAYVSLPPWNISHVQQE
ALFECVVHTSAKEGIILYNSARQGGFVAVEIQEGLPVALVGEGGTKTELRSLTFVNDRNW
HSIKLFFSPKTLQLTVDKETVKTSIRSRSKGLQLRGSVFVGGIDNSTRTEVRKMGLVSVS
GKRVRGGSFKGCLKDMKVNGMKMGLPNAAVTKDISVGCEPEKEPEPSTTMSPMTLPTVPK
SHFDPTSVTPTPEFPMSTLDRGLDKRYGMNFVLLRNLVVPEGGRGSLESKHIKVLLDFKK
LRIRQSQIMFRIQEQPVLGQIRLDVDQDQEEENTFSMLDLWYGKVMYIHGGSENPEDFFT
FSIFSSSRKEVPDYLKGTRRYRYNITVMPTNDAPELSLPQGNLFILLDNSRKHLTTEVLK
ATDIDSNHTNLIFSVLGNLNTDAGYLEVEDNPGVAVTTFSHSHLNEGKVNYVHTGARNSR
IVLRVSDGDKVSNTVVLRIMAIGLEYKIGNNTGLEIIQGEVSVISNKHLAVQTNAVKQVV
DIRYDVVEPPQYGELQRLHSSGEWKPTGSFSQRLLEKERLRYLSTFQEIQTANATDYFKC
KITVAGRVDTELVFPITVKWVHYNLVRNVMANIDKVRKVTLDSQYLYATVDVVTLSEDDL
HFRVLSSPKKGQLLLVNELLKKNSTFSQRNVTDLKVQYELVDRPYEDTSDTFKFHVFSKH
AQTPSYNFQISIKADVNSVFIRNYGLLIKEGESKLITKAELFAETLSTKEMYYTVTSSPK
HGKLQRINLSNSNTSYNIIQTFSNQDLLEERVMFIHDDTETTQDQFTFIASTSQEYKSSV
TDDEVGSKEGKFNISIQLVNDEKPVRVVDKVFHVVRDGQRLLTLDDLCYHDADSDFSDGQ
LVYTRRGIPMGDLVLVNDTSHRLFQFTQKELEEKRVLFLHRGVSSGRFVLFVSDRKHFVS
TLLDVTAEDPFLRLGNNTGLLVQKGKEVTLTTGNFSVLTNLDIRDDSEVTYKVSEPPRNG
GLYRHGDISTQSFTQRDLKKGLVSYRHDDRKNPGDSFNVTVKVKGIYLNVRVNVKVYLDS
HQRTPILQHNHTLLVEESKPVKIDQSRLEVIHEDNMPSEIVFTVKVAPLHGFIRRFVEAE
EQYVGTGLTPVQTFSQEDVNAGNIQYMQTAPGQVNDTFLLDVSNGVTEVNNISMSVDIIV
HLIPLQVLNFTLREGGSKALTQEVLRVTNRHFSGLNFLYSLSEPPQNGHIEHSRYPGVPL
RVFTRRQVEQGVIYYIHDSSETLEDNFTVVANDTGLRKQSSPCTVYIQVTAVNDQHPVIT
ANRVLRVWERSVTEIRPENLDAQDEDTPPEELQVIVTPPNNGHLALKSAPTRPLLNCTLQ
HIHLGQLVFVHSGAMSGGFNFQVNDGVNFSPRQIFSITASTLVLSLENNQPLKVFPGSTT
PITRDDLQAVTNDKRSNRTMTFNVIRRPELGRLVTVLANNYTVDVSSFTQTMVDQGEVLY
FQSFVESVGWSAMDSMTFSVFSPPVTLETQTFEMDISYENAGTDRKSLLLANTGAVVTEG
DSVVIDESKLDASNLMFKLPTPQRNSHEVWFQVKSLPQHGVIVVGERILSVEKPNFSQRI
LNKYGITYRHDDSETRHDSFVFDTWLNPKGKLAQRPLDVSQVLEEWFNITVVPINDQPPV
LKTKTPSLSVVQGDIVALGLQNLNVKDLDNPSEDIQYTVISKPNNGYLALAGSLNESVVS
FTQAQINSGKVYFVHDGGQASGVFYFSISDGHHEPVYKLFNLELTEITISLVNNTGLTLK
QGQTCVALTQGSLAAETNGKTTTIHYRITKLPRYGKILWLDNQDLRQFEQEDLRTGRLFY
QMTSVTSGQDSFEFTVFTSEANLTNQVVNITVKPLVRFGKGVRIPNGIVVKLNAGFLNAT
ELASLTGNDPIFEVVSQPKYGKLARGKAKAGMKTEPVESFSFQDVKQERISIELNANMTE
VQELNDSLVFVMKAENVPPAKGEFRFTVVPYDPSLVRRTESPVLTTSSPFSQSLNQSNQT
TVFGIGTALPSLSTSFLSTQRPSKTHQKFKGRNHWGNTNHNDSTGTSLGKPTMGRGEDLS
EIPFMMTPVRVESYPQRTSNPLLVILPLLVLLLLVIILVVLFLLLRRNRKRKQKPLTLKP
LPSPSTPPDYHDQPQRSAAAPTVTVTPLSPSDPGSPALDRPLPFAKRGSVSNSASLPDCS
LKAVNPESSDQLIRTPTPTLQQNQYWV
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacatggaatttcctataagaaacagcaagaaacggtgtttttacgcgctgttg
tggtcacttgttagccaactaacactgggagcctcgttctatggtgatggctatgtgcag
ctcaaggcagtggagtcgtcgaaccgtaactccctgcgtgttcgtttccgtacctccagc
ccccgcggtctgctcttcctcgctgccggccatacagactaccttctactggagctgaac
tctggtcgcctgcaggtgaagctggacttgggatccggtgagtgtttgctacggtctgaa
agtagcacccagctaaacgacctggcctggcacactgctgagctcctccacgaccgccac
aatgtcaccctgaccgtggaccagcactcccacaccagcctcaggatgccagggcatggg
tctcagaaacaggagctgagcatccaggaagggctgtacatcggcggctctggaggcctg
gacaagctctacctccccagtgacctgactggtttccgggggtgtatggacaaggttgtc
ttcaacgagcacgatatgttatcgtcgttgagaccttacgcaggattcaagagcgtctat
gaggtttccttgggctgtagtccccagttcttcgctaacgaggaggaccctgttagtttc
tttagttctagagcgtatgtctccctgccaccctggaatatctcccacgtccagcaggag
gctctgtttgagtgtgtggttcacacctcagctaaagaggggatcatcctgtataactcg
gccagacaggggggctttgtggcagttgagatccaagagggtttgcctgtagcccttgtg
ggtgaaggaggcaccaaaacagaacttcgctcccttaccttcgtcaatgacaggaactgg
cattcaatcaaactgttcttcagtcccaagaccctccagctgacagtggacaaggagacg
gtaaagactagcatcagatctcgctccaagggactacagctgaggggttctgtctttgtt
gggggcattgacaacagcacgcgcacagaagtccggaagatgggtctggtgtctgtgtca
gggaagagggtcagaggaggctcgttcaagggctgtctgaaggacatgaaagtcaacggg
atgaagatgggtctgcccaatgctgctgtcacgaaggatatctctgtgggctgcgagcca
gagaaagaaccagagccctcgaccacgatgagtccaatgactcttccgactgtccccaag
tcccacttcgatcccacttccgtcacccccacaccagaattccccatgtccactctggac
agggggctggacaagaggtacgggatgaacttcgtgctgctcaggaaccttgtggtcccg
gagggaggacgtggatctctggaatccaaacacatcaaggttctcctggacttcaagaag
ctcagaatacggcagtcccagatcatgttccggatccaagagcagccggtactcggtcag
atcagactggatgtagaccaggaccaagaggaggagaacaccttcagcatgctggacctg
tggtacggcaaggtgatgtacatccacggaggatcagagaacccagaagacttcttcacc
ttctctatcttctccagcagcaggaaggaggttcctgactacctgaaaggaaccaggagg
tatcgctacaacattacagtgatgcccaccaacgacgccccagagctcagcctgccccag
gggaaccttttcattctgttggataactctagaaaacacctgaccacagaggtgttgaag
gccacagacatcgacagcaaccacaccaacctaatcttctccgtcctggggaatctgaac
actgacgcaggttacctggaggtggaagacaaccccggcgttgcagtgaccacgttctcc
cattctcacctaaatgaagggaaggtgaactatgtccacactggtgcgaggaactccagg
atcgtcctgagggtcagtgatggagacaaggtgagcaatacggttgtgcttaggatcatg
gccatagggttggagtataagatcggcaacaacaccgggcttgagataattcagggtgag
gtgtctgtgatcagtaacaagcacctggccgttcagaccaatgctgtgaagcaagtggtg
gacatccgatatgatgtcgtcgagccacctcagtatggtgagctgcagaggcttcactcc
agcggagaatggaagcccactggttccttctcccaaaggctactggagaaagaacgcctt
cggtacctcagcactttccaagaaatccagacagcaaatgctacggattacttcaaatgc
aagatcactgtagctggtagggtcgatactgaactggtcttccccatcactgtgaagtgg
gtacattataacctagtaaggaacgtaatggccaacattgataaagttcggaaagtgacg
ttggactcgcagtatctttatgccactgtggacgttgtgacactatccgaggatgatctg
cacttcagagttctatcctcaccgaagaaaggacaacttctgctcgttaacgagttactg
aagaaaaactcaacattcagccaaaggaatgtcactgatctaaaggtacaatacgaactg
gtcgacagaccgtacgaagacacgagcgacacttttaaattccatgtgttctccaaacat
gctcaaacgccaagttacaatttccagatctcaataaaagcagatgtcaatagtgtattt
ataagaaattatggacttttgattaaggagggagagagtaaactcatcacaaaggccgag
ttgtttgcagagacactcagcaccaaggagatgtactacactgtcacaagtagccccaaa
cacgggaagctgcaacgcatcaacctgtccaactccaacaccagttacaacatcatccaa
acgttcagcaatcaggatctcttggaggagcgcgtcatgttcattcacgacgacacagag
accactcaggaccagttcacattcatagcctccactagtcaggagtacaaatcctccgtc
acggacgatgaagtcggctctaaagaagggaagttcaacatctccatccagctagttaat
gacgagaagccagtgcgcgttgtcgataaagttttccatgtggtgagggatgggcagcgg
ttgctcaccctggacgatctatgttaccatgatgcagactcggacttcagcgatgggcag
ttggtctacacgcgacggggaatcccgatgggagacctggttctggtgaacgacacctct
cacaggctgttccagttcacccagaaggagctggaagagaagagagttctgttcctccat
cgaggcgtgagctccggacgcttcgtgctcttcgtgtccgacaggaaacactttgtctcc
actctgctagacgtcactgccgaagaccctttcctaagactcggcaacaacacaggtctg
ttagtccagaagggaaaggaagtgaccctaaccacaggtaacttcagcgtgctcacgaac
ctcgacatccgagacgacagcgaggtcacgtacaaggtgtccgagccgcctaggaacggc
gggctgtatcgccacggcgacatctccacgcagtcattcacccagcgcgacctgaagaag
ggcctcgtttcgtatcgccatgacgacagaaagaacccgggggactctttcaacgtgacg
gtgaaggttaaaggcatttatctgaacgtcagagtcaacgttaaggtttacctggacagc
catcagaggacccctatcctccagcacaaccacactttactggtggaggagagcaagcct
gtgaagattgaccagagtagactggaggtcatccacgaggacaacatgccgtctgagatt
gtattcacagtgaaggtggccccgctacacgggttcatccggcgcttcgtggaggctgag
gagcagtacgttggaacaggactgacccccgtccaaaccttctcccaggaagacgtaaac
gctggcaacatccagtacatgcagacagcccccggccaggtcaatgacaccttcctattg
gatgtctccaacggggtcacggaggtcaacaatatcagcatgtccgtggacatcatcgtc
cacctcatccctctacaggtgttgaacttcaccctcagagagggcggatccaaagctttg
acccaggaagtgctcagggtcaccaaccgacacttctctggcctcaacttcctgtatagc
ttgtctgaacccccacagaatggccacattgaacattcacgttaccccggggttcctcta
cgggttttcaccagacgccaggtggagcaaggggtaatctactacatacatgacagcagt
gagacgttagaagacaacttcactgtggtggccaacgacacaggcctgaggaaacagagc
tctccctgtaccgtgtacatccaggttacagccgtcaacgaccagcatccagtcatcacc
gccaacagggtcctcagggtgtgggagaggtcggtgacagagatccgccctgagaatttg
gacgcccaggatgaggacacgccccctgaggagctacaggtgattgtgactccgcccaac
aatggccacctggcgctgaagagcgcccccaccaggccgctcctgaactgtaccctacaa
cacatccatctgggacagctggtttttgtccacagtggtgccatgtcgggagggttcaac
ttccaggtgaacgacggagtgaacttttccccccgccagatcttcagcatcacagccagc
accctggtcctcagtctggagaacaaccagcccctcaaggtgttcccaggctctacaaca
ccaatcaccagggacgatttgcaggcagtgaccaatgacaagagatccaaccgtaccatg
accttcaacgtgattcgtcgacccgaactcggaagactggtcacagtgcttgctaataac
tacactgtagatgtctcctccttcacacagacaatggtggaccagggggaggttttgtac
ttccaaagttttgtggagtcggttggatggtctgccatggactcaatgaccttctcagtg
ttttcaccaccggttaccctggagacccagacctttgagatggacatctcctacgagaat
gctggaaccgaccgcaaatcattgctcctcgctaacaccggtgcagtggtgacagagggt
gacagtgttgtcatcgacgagtccaagctggacgcgtctaacctaatgttcaagctgccc
acgccccagcgcaactcccatgaggtttggttccaggtcaagtcgctaccccagcatggc
gttatcgtggtgggagagaggatcctcagtgtggagaaacctaacttctcccagcgcatc
ctcaacaagtatggcatcacatatcgccacgacgactccgagacgcgccatgacagcttt
gtcttcgacacctggctgaaccccaagggaaagctggcccagcgccctctagacgtcagc
caggtgctggaagagtggttcaacatcacagtggtcccgatcaatgaccagccacccgtc
ctgaagaccaaaacccccagcctgagtgtggtacagggggacatagtggccctgggactg
cagaacctcaatgtgaaagatctggacaacccttcagaggatatccagtacactgtcatc
agcaagcccaacaacggatatctggccctggcaggaagcctgaatgagtctgtggtgtcc
ttcactcaggctcagatcaacagtgggaaggtgtactttgtccatgatggaggccaggcg
tcgggggtcttctatttcagtatctcggacggccaccacgagccggtgtacaagctattc
aacctggagttgacagagatcaccatctccctggttaacaacacagggctgactctaaag
cagggtcagacctgtgtagcgttaacgcaggggagtctggctgcagagactaacgggaaa
accacaacgattcactaccggatcaccaagcttccacggtacggcaagatcctttggctg
gacaaccaggatttgaggcagtttgagcaggaggacctaaggactggtcgcttgttttat
caaatgacgagcgtcacatctggtcaggacagctttgagttcactgtatttacgtcggaa
gctaacctgacgaatcaggttgtcaacatcacagttaagcccctggtgaggtttggcaaa
ggggtgagaatacccaatggcattgtggtcaaactcaacgctggttttctcaatgcaact
gagctggcttctctaacaggcaacgaccccatcttcgaggtcgtgtcccagccaaagtac
ggcaagctggcccgaggaaaagccaaagctggtatgaaaacggaaccggtggagtctttc
tcctttcaggatgtgaagcaggagaggatatccatcgagctcaacgctaacatgactgaa
gtgcaggagctgaacgactcgttggtttttgtcatgaaagcggagaacgtcccaccagcc
aagggagagttccgcttcactgtcgttccatacgatccatcgctagtcagaagaacagag
agtcccgtcctgaccaccagcagtcctttctctcagtctctgaaccaatcgaaccaaacg
acagtgtttggtattgggacagcactaccctccctgtctacatccttcctctccacacag
agacccagcaagacccaccagaagttcaaaggtcgcaatcactggggaaacaccaatcac
aacgactcgacaggtacatctttgggcaaacccaccatgggtagaggagaagacctttct
gagatcccctttatgatgacaccggtccgagtagagtcatacccacagaggacttccaac
cccctattggtgatcctacctctcctggtcctgctcctattggtcatcatcctggtggtg
ctgtttctactgctgagacgcaacaggaagaggaaacaaaaacctctgaccctgaaaccg
ctgccctcgccctcaaccccaccggactatcacgaccagccgcagaggagcgcggccgct
cccacggtaacggtgactccgctgagcccaagcgaccctggaagccctgccttggacagg
ccgcttcctttcgccaaacggggctcagttagcaactctgcatcactgccggactgctca
ttgaaagctgtaaatccagagagttcagaccagctcattaggaccccaaccccaactcta
cagcagaaccagtactgggtatga
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