Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389825
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Entry
139389825 CDS
T10872
Name
(RefSeq) uracil-DNA glycosylase-like isoform X1
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
139389825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139389825
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
139389825
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
139389825
Prokaryotic type
139389825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
139389825
NCBI-ProteinID:
XP_070992896
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All DBs
Position
30:21844382..21852602
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AA seq
298 aa
AA seq
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MIGQKTINSFFSPISKKRASGGEHEREDAQEHVKKLKLSGNGTTESPPSPVCPELLARIA
KNKQAALEKLSASNTPDEFGESWRKSLVSEFGKPYFINLMSFVNGERKLNTVYPPPQHVF
TWTQMCDIQDVKVVVLGQDPYHGPNQAHGLCFSVQRPIPPPPSLLNMYKELASDIEGFQH
PGHGDLTGWAKQGVLLLNAVLTVRAHQANSHKDKGWETFTDAVVQWLSSNREGLVFMLWG
AYAQKKGAAIDRKRHHVLPTVHPSPLSAHRGFFGCKHFSKTNELLEKSGKEPIDWKAL
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgatagggcagaaaacgatcaattcttttttttcgcccatttcgaagaagagagcttcg
ggaggggaacatgagagagaggatgcccaagaacatgtgaagaagctgaagctatcaggc
aacggaacgacggagtcacccccttctccagtgtgtccagaactgctggcccgaatcgcc
aaaaacaagcaagctgcgttggagaaactgtccgccagtaacacaccggatgaatttggg
gagagttggagaaagagtttggtctctgagtttggaaagccttatttcataaacttgatg
tctttcgttaatggagagaggaaactgaacactgtctacccaccccctcagcatgttttc
acctggacacagatgtgtgacatccaagatgtcaaggttgtagtcctcggtcaggaccca
tatcacggtccaaaccaagcccatggattatgcttcagtgtgcagagacctatcccacct
ccacccagcttgttgaatatgtacaaagaattggcgtctgatatagagggcttccagcac
cctggacatggagatttaactggatgggctaaacaaggtgtcttgctgctcaatgctgtg
ctgaccgtccgagctcaccaggccaactctcacaaagacaagggctgggaaactttcact
gacgctgtggtgcagtggctcagctccaaccgggagggcctcgtcttcatgctgtggggg
gcctatgctcagaagaagggagcagctattgataggaaacgtcaccatgtccttcccact
gtacacccctcccctttatctgctcatcgaggcttctttggatgcaagcacttttccaag
accaatgagttgctggagaaatcagggaaggagcccatagactggaaggcactttga
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