Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389871
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Entry
139389871 CDS
T10872
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04020
Calcium signaling pathway
Brite
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
139389871
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
139389871
NCBI-ProteinID:
XP_070992970
LinkDB
All DBs
Position
30:complement(11520389..11663651)
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AA seq
2416 aa
AA seq
DB search
MARFEEELSNRRGGVCQAGPPRGAGRPAGPPSGPRVYKQSMAQRARTMAIYNPIPVKQSC
LTVNRSLFIFSEDCIIRKYAKKITEWPPFEYLILATIIANCIVLALEQHLPAGDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGMLATVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGLDFYMGK
FHRTCFSTDTGEQAAEFPCGMEAPARTCENGTVCQEYWIGPNYGITNFDNILFAILTVFQ
CITMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKHAEEKSPLDGAWYKRKHNNPVLKR
SKKSKNDLINAEEGEDHFTDISSVVPPGSPFARASLKSSKNGSASYFRRKEKRLRFTIRH
LVKAQSFYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLTEMSMKMYGLG
PMTYFHSSFNCFDFGVIIGSIFEVIWAVVKPGASFGISVLRALRLLRIFKVTKYWNSLRN
LVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGLFNFDEETPTTNFDTFPAAILTVF
QILTGEDWNAVMYHGIESQGGVRRGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQE
LTKDEEEQEVAITKKMALQKAKEVKEVSPMSAANISITALHSILYTGQHGAERAMPASFV
KQSQGALSSSSSVCSVNSLKEQQKSLKMMSVWEQRTTQLRRHNLRASSEALYSELDPEER
LRMSSALHIRPDMKTHLDRPLVVEPHDGPGPMGQHKPRTPEETDTPEDPAGPQPRRHHRH
RDRERPIDEANENGDPGKEGRHHVHHSRSKDPEATRGKEGKSERSRSREGGKRHHHQTLV
DEGGGGGGTGEREHRHHHSHRQAREGNGTVNSGGKGERRSRHKDGRSGERCSRGENGANG
ERRRHKTHGSRGQSTLEGEDHSEREKGRGHRDRYVESEGDSLAISPQQDPGDQRWGTEGP
EDSDNQRNVRRTGQTAVNIPPVTITPPPGETTLIPMNSIDCETMPMNEEKKTLEERTQSG
PRPILPYSSMFVFGQANVVRRLCHYIVSLRYFEMCILVVISMSSIALAAEDPVQANAPRN
NVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFSGSK
GKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVIA
VQLFKGKFFYCTDESKSLEKDCRGNFLDYDKDEVAAQPRVWKKYEFHYDNVLWAFLTLFT
VSTGEGWPDVLKHSVDATFEDQGPSPGYRIEISIFYVVYFVVFPFFFVNIFVALIIITFQ
EQGDKAMSECSLEKNERACIDFAINAKQMTRYMPENVQSFQYRMWKFVVSPPFEYSIMIM
IALNTVVLMMKFHGAPDFYEAMLKHFNIVFTALFSLECILKIIAFGPLNYLKDAWNVFDF
VTVLGSITDIVVTEINDRLLNLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYV
CLLIAMLFFIYAIIGMQVFGNIELNEDTAITHHNNFRTFLQALMLLFRSATGEAWHEIML
SCLSHRACDERSGNLGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSI
LGPHHLDEFIRVWAEYDPAACGRIRYNDMYNLLRIISPPLGLGKNCPNRVAYKRLVKMNM
PIADDNTVHFTSTLMALIRTALEIKLSSGMVAQRLSDAELKKELSTVWPSLSQKTMDLLV
TPHKPNELTVGKVYAALMIFDYYKQNRAKRLKEQQQQQQQQNAAGSQGKVGALFKPILPL
TYKQEKEKEKAINNMESPCELLPQPQPQALPRPSSTLLNNMEPPCELLPQPQALPRPSST
LLNNGGTLPGHDGTMKGSSSWVSEKSREVHRPRNKTPVQRGQSEDVPNTTLPQESVEMRK
MDTSDSTVPGPGSGLESQGRAVSMPRLNAELQRSQSRHSPGTLLAPVPDCSPMKRSASTH
APQRPQEANLRDYTLETPSIQERPHHHHHHRCHHRRERDKKQRSLDRTPSTAGTPGDPAA
EPSSRDRVQDRGRSHERKNHSTAGEKQRYYSCDRYGSREHCHTTKSATTSCATSPSEVQD
PSINKQGSGSVKCSPVMMTSGASTPSRGRRQLPQTPLTPRPGVAYKTANSSPVHFVSAQC
SSGLPTLSPGRLSRGLSEHNALLHSGSSHIPSPVTRISSEPFLGYSHREAHGQGSLYCSL
RDELLSPYAARARSPRTALPQMGPGPLHLPPPPQQSHAVPNGYHFTFGGIGNASPESGSG
ARAPRYYHEADEDEWC
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atggctcgattcgaagaggaactatctaatcggcgtggaggggtctgtcaagcgggccca
ccaaggggggcaggtcggccagcaggccccccaagcggccctagggtgtacaaacaatca
atggcccaaagagccaggacaatggccatttacaaccccatccctgtcaagcagagctgt
cttactgtcaaccggtctctcttcatctttagtgaggattgtatcatacggaaatatgcc
aaaaagattacagaatggcctccatttgaatacctgatcctggccaccattatagccaac
tgcatcgtccttgccttggagcagcacctaccagccggcgacaagacccccatgtcagag
cgcttggacgacacagagccctattttattggaatattttgttttgaagctggcattaag
atcatcgcccttggctttgcgtttcacaaaggctcctatctccggaatggctggaatgta
atggactttgtggtggtgctaacagggatgctggctacagtgggagcagactttgacttg
agaactctgagggcagtacgggtcctgaggccactgaaactggtgtctggaatccctagt
cttcaggtggttctgaagtccatcatgaaagccatggtgcctctgctgcagatcggtatg
ctgctcttctttgctatcctcatgttcgccatcatcggcctggacttctacatgggcaag
ttccaccggacctgcttcagtactgatacaggtgagcaggcagcagagttcccctgtggt
atggaggctccagcgaggacctgtgagaatggcactgtgtgtcaggaatactggatcggc
cccaactacggcatcaccaatttcgacaacatcctctttgctattctgactgtcttccag
tgcatcaccatggagggatgggtggacatcctctataacgccaacgatgcctcaggcaac
acctggaactggctctacttcatccccctcatcatcatcggatccttcttcatgctcaac
ctggtcctgggagtcctgtctggggagtttgccaaggagcgtgagcgtgtggagaagagg
caggagtttctgaagcttcgcaggcagcagcagatcgagagggagctgactggatacctg
gagtggatatgcaaggcagaggaagtgatgctggcggaggaggacaagcacgctgaagag
aagtcccctctggatggagcgtggtacaaaaggaaacacaataacccagtgttgaaaagg
tcaaagaagagcaagaatgacctgatcaatgctgaggagggcgaggaccacttcactgac
atctcatctgttgttcctccagggtctccgttcgcccgggccagcctgaagagcagcaag
aacggcagtgcctcctacttccggaggaaagagaagcggctccgcttcaccatcagacac
ctggtcaaggctcagagcttctactggacagtgctgtgtctggtgggcctcaacacactg
tgtgtggccatcgtccattacgaccagcctgagtggctcacatatgcactgtatttggca
gagtttgtattcctgggcttgtttctgactgagatgtccatgaaaatgtatggactagga
cccatgacctacttccattcgtctttcaactgttttgacttcggagtgattataggcagt
atttttgaggtgatctgggcagttgtgaaacctggggcctccttcggcatcagcgtcctg
agagctctccgtctgctcaggattttcaaagtcactaagtactggaactctctgaggaac
ctggtggtctctctactcaactccatgaagtccatcatcagcctgctgttcctcctcttc
ctcttcattgtggtattcgccctactgggcatgcagctctttgggggactgtttaatttt
gacgaggagacgccaacaacaaactttgacacctttccagcagccattctcacagttttc
cagattctgacaggagaggactggaatgcggtgatgtatcatgggatagagtcccagggg
ggcgtgcgccggggaatgttctcctccatctacttcattgttctcaccctgtttggaaac
tacactctcctcaatgtcttcttggccatcgctgttgacaaccttgcaaacgcacaggag
ctcactaaggatgaggaagagcaggaggtggccatcaccaagaagatggccctccaaaag
gccaaggaggtcaaggaggtcagccccatgtcggccgcaaacatctccatcacagcgcta
cacagcatcctgtacacaggccaacatggagcggagagggcaatgccagcaagttttgta
aagcaaagtcaaggtgcactctctagcagctcgtccgtctgcagcgttaattcacttaag
gaacagcagaagtctctgaagatgatgtcagtgtgggagcagcgaaccactcagctgagg
agacacaacctgcgggccagcagtgaggccctgtacagtgagctggaccctgaggagagg
cttcgtatgtcctccgccctgcacatccgccctgacatgaagacccacctggaccggccc
ctggtggtggaaccccatgacggccccggccctatgggccaacacaagccccggacccct
gaggagacggatacccctgaggacccggccggcccccagccacgcaggcaccaccgccac
cgggacagggagagacccatcgacgaggccaatgagaatggcgatccaggcaaagagggt
aggcaccatgtccaccacagtcgtagcaaggacccagaagccacccggggcaaggagggg
aagagtgagcggtcgcgcagccgagaggggggcaagaggcaccaccaccagaccttagtg
gatgagggaggaggaggaggggggacgggggagagagagcaccgccaccaccactcccac
agacaggccagagagggcaacggcactgtcaacagcggaggcaagggcgagcgcaggtca
cgccacaaagatggccgctcgggagagaggtgctccaggggagagaacggagccaatggg
gagaggaggagacacaagacccacggatcaaggggccagtccacactggagggagaggac
cacagtgagagagagaagggaaggggccacagggacagatatgtggagtctgagggcgac
tccctggccatcagcccccagcaggaccctggagatcagaggtggggcacagagggacct
gaagactcagacaaccagaggaacgtcagacggactggacagacggccgtcaacatcccc
cctgtcaccatcacccccccacctggggagactacccttatacccatgaacagtatagac
tgtgaaaccatgcctatgaacgaggagaagaagacactggaggagcggactcagagtgga
cccagacccatcctgccttacagctccatgtttgtgtttggccaggccaacgtggtacgg
cgtctgtgtcattacattgtcagcctgcggtactttgagatgtgtatcctggtagtgata
tccatgagtagcattgcattggctgcagaggaccctgtccaggccaacgctccgcgcaac
aatgtgctcaagtatctggactacgtcttcacgggagttttcacatttgagatggtgatt
aagatggttgacctgggcctcctgctccatcctggttcttacttcagagatctctggaac
attctggacttcattgtggtcagtggcgcactggtggcatttgcattttcagggtccaaa
ggaaaggacatcagcaccatcaagtccctcagagttctgcgagtcttacggcccctcaag
accatcaaacgcctacccaagctgaaggctgtgtttgactgtgtggtcaactccctgaag
aacgtgttcaacatcctcatagtctacatgctcttcatgttcatcttcgctgtcatcgcc
gtgcagctgttcaagggcaagttcttctactgcaccgatgagtccaagagcctggagaaa
gactgcagaggtaatttcctggactatgataaagatgaggtggccgcccagcctcgggtg
tggaagaagtatgagttccactatgacaacgtgctttgggccttcctcactctcttcact
gtgtccaccggagagggctggcctgatgttctgaagcactctgtggacgctacctttgag
gaccagggtcccagtccaggctaccgtatagagatctccatcttctacgtggtctacttt
gtggtcttccccttcttctttgtcaatatctttgtggccttgatcatcattaccttccag
gagcagggagacaaggccatgtcagagtgcagcctggagaaaaacgagagagcctgcatt
gactttgccatcaacgccaagcaaatgacgcgttacatgccagagaacgtgcagtccttc
cagtaccggatgtggaagtttgtggtgtcacctccgtttgagtactccattatgatcatg
atcgccctgaacaccgtggtgctcatgatgaagttccatggagctccagacttctacgag
gccatgttgaagcacttcaacatcgtcttcactgccctcttctctctggaatgcattctg
aagatcattgccttcggtccgctgaattacctgaaggatgcctggaacgtgtttgacttt
gtgacagtgctgggaagtataactgacattgtggtcacagaaatcaatgaccggctgttg
aatctgagttttctgaggctgttcagagcagctcgtctcatcaagttgctgaggcaggga
tacaccatccgtatccttctgtggaccttcgtccagtccttcaaggccctgccctatgtt
tgccttctgatagcgatgctgttcttcatctatgccatcattggtatgcaggtgtttgga
aacattgagctcaacgaggacacagccatcactcaccacaacaacttccgcacttttctt
caggccctcatgctgctgttcaggagtgccacaggggaggcgtggcatgagatcatgctg
tcgtgtttgagtcacagagcctgtgatgagaggtcaggcaacctggggaaggagtgtggc
agtgacttcgcctacttctactttgtctccttcatcttcctctgctctttcctgatgctc
aatctgtttgtggctgtcatcatggataactttgagtacctgactcgagactcgtctata
ctggggcctcatcatctggatgagttcatccgtgtttgggctgagtacgaccctgctgcc
tgcggacggattcgctataacgatatgtacaacttgttacgaattatctcaccccctctt
ggcttagggaagaactgccctaatagggtagcgtacaagcggctagtcaagatgaacatg
cccatcgctgatgacaacacagtccactttacctccactctcatggcgctgatccgcacg
gccctggagatcaaactgtcctcagggatggttgcccagcgtctttctgatgctgaactg
aagaaagagctctctacagtttggccaagcctttcacagaagactatggatctgttggtt
acaccacacaaacccaatgagcttactgttgggaaggtgtatgcagccctgatgatcttt
gactactacaagcagaaccgagccaagaggctcaaggagcagcaacagcagcaacagcaa
cagaatgctgccggctcccagggtaaggtgggggctctgtttaaaccaatactgcccctg
acttacaagcaggagaaagagaaggagaaggccatcaacaacatggagtctccctgtgaa
ctacttcctcagccccagcctcaggccctacctagacccagctccaccctgctcaacaac
atggagcctccctgtgaactacttcctcagcctcaggccttacctagacccagctccacc
ctgctcaacaacggaggcacactgccaggccatgatggcaccatgaaaggatcgtcctcc
tgggtgtcagagaagtctagagaggtccacagacccaggaataagacacctgtccaaagg
ggccagtctgaagatgtcccaaacacaacccttccccaggagtcagtggagatgaggaag
atggacaccagtgacagcacagtgcctggtcctgggtctggactggagagccaggggagg
gctgtgtccatgccccgcctcaacgcagagctgcagaggagccagtcacgccactccccg
gggaccctgctggcccctgttcctgactgcagcccgatgaagcgctctgcgtccacccat
gccccacagcgcccccaagaggcgaacctgcgtgactacaccctggagacgcccagcatc
caggaaaggcctcaccaccaccaccaccaccgctgccaccaccgtagagagagggacaag
aagcagcggtcactcgacaggacaccaagcaccgctggtacaccaggagacccggctgca
gagccctcgtctagagacagggtgcaggaccgcggccgctcccatgagaggaagaaccac
tcgacggcgggagagaagcagcggtactactcctgcgatcgctacggcagcagggaacac
tgccacaccaccaagtctgccaccaccagctgtgccacctcccccagcgaggtgcaggac
cccagcatcaacaagcagggtagtggttcggttaaatgcagcccagtgatgatgacctca
ggggctagcacacccagccgtggacgcaggcagctaccccagacccccctgaccccccgc
cccggggtggcctacaagactgccaactcctcccctgtgcactttgtgtctgcccagtgt
agcagtggcctgcccaccctgagtcctggccggctgagccgcgggctgtctgagcacaac
gccctgctgcacagtggctcctcccacatcccctcccctgtcacccgcatcagctctgag
cccttcctgggttacagtcacagggaagcccatggccagggcagtctgtactgcagcctc
cgggacgagctgctgagcccctatgctgccagagcacgctcccctcggaccgcactgcct
cagatggggccggggcccctccacctgcctccgccaccccagcagagccatgcggtgccc
aacggataccacttcacctttggtggtattggcaacgccagcccggagtctggctctggc
gccagggcacccaggtactaccacgaggcagatgaggatgaatggtgctag
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