Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389872
Help
Entry
139389872 CDS
T10872
Name
(RefSeq) homeobox protein cut-like 2 isoform X1
KO
K09313
homeobox protein cut-like
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139389872
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
139389872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
DUF3095
Motif
Other DBs
NCBI-GeneID:
139389872
NCBI-ProteinID:
XP_070992971
LinkDB
All DBs
Position
30:13034112..13157984
Genome browser
AA seq
1554 aa
AA seq
DB search
MAADVGSMFQYWKKFNLRRLQRELNSIASELAGRQEESEHSHKHLVELSREFRRNVPEEV
REMVAPVLKSFQAQVVALNKRSKEAESAFLGIYKQLIEAPDPVPVLEATHTLEERLQQLQ
SSAPNSEALVREISGHWKRHLECLDKPGDTEEDPAAAESGPGEASSWTAGVMTPNSKQAL
RVTGSPQQNHQGQNQTEGEAEDTDATLADRLGEAEERIKVLHSSLSTAQTDLLDLRCKYD
QEKANKAEEVGVIMMNLEKANQKAEMAQREVERLKEQLASPRSATPGSCHPPEGTSGERG
DVLPSKLEAKLMAKDREILRLLENVQRLQFALQKVQNTSANQIIELESQLAYKTEAIERL
EAKLQSQLDYEEIKTELRILKVMKLASTNGSSSQDTAEAFLRDKEAFLPSPKYLMDKARI
LHNNDEDRSEESGRESDREWGRPSGSFSSVSQVDERTSASPGPPTMDVSSSSHDLPRPFS
VSPCSRDRLSADHVVHKQLLSSPLFKKESGSPLMAFPTALYAAKVTLISANQGPAGAGGI
EAGLPSDQSESGSSTAGDDDQLETAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEI
LARPKPWRKLTVKGKEPFIKMKQFLSDDQNILALRTIQVRQRGSITPRIRTPETGSDDAI
KNILEQAKKEIQSQRGGVSGTGDIKSSLGSPSGLSSNGAGGSSDDTIKNILEQARREMQA
QQQALMEMDVCGRASATSAGPQVERLGLPEPSKVLPLPTFIKQEEGGTVTVCMANPISSP
QTPLSVLSPAAFVQNIIRKVKSEIGEAGTYFDQHWSVDRGPIGMVGGVGGGSSRPFTSVS
PSLSSSSSSGPSALPRPWPRLENGECLPNSEEASAAEEDTGSGMVRSVEVKVESDVSVSG
ESPGPGRGLSYYPSYLPRTLKPTVPPLTPEQYEMYMYHEVDTIELTRQVKEKLAKNGICQ
RIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLLDQLGQALTQLPSQSLS
RDKSPVTAQSSPSPPPSPEESHPSPLVEPVSHTLESSKENQQPDGLGLMPPHPEEGKSTP
SLLSLHQPHTPLGIQELVAMSPELDTYAITKKVKEVLTDNNLGQRLFGESILGLTQGSVS
DLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVDKLRDMKKMEKKAYLKRRYGLLSTGSD
SDSPSARSECVSPALASIDLCPYSQVKKPRVVLGAEEKEALRKAYLLEPYPSQHTIEMLA
CQLNLKTNTVINWFHNYSRSRMRREVLMEGLQDNDTDTEHHSYSPSAIQSPISDGDERRL
LHPAGRTPHPIRPLSANTPLPHVKQEASEREDEGEEEERNGYIKQPKIQCFSMGVQFPQL
KTEHEDLMGGCRELHLAPHYPQSLRQEEGMSSQAQGLFQEALSLDGPQRTSQSRHEVDDS
SKSPVDPVSFKASSEPSRSSLEVSLNSPSAASSPGLMMSVSPVSSSSAPISPSLPNPPTT
STNHSLDPNPMPPIQSPKPNRSVQRRTEKIANLNSIIHRLERAANREETLEWEF
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgatgtgggatcgatgtttcaatattggaagaaatttaatctacggcggctt
cagagggagctaaactcaatagcgtctgagctggcggggcgacaggaagagagcgagcac
tcccacaagcacctggtggagctgagccgggagttcaggagaaatgttccggaggaagtc
cgggagatggtggctcctgtcctcaagagtttccaagctcaggtggtcgctctgaacaag
cgcagtaaggaggcagagtcggcattcctgggaatctacaagcagcttatcgaagcccct
gacccagttcccgttcttgaggccacacacaccctggaggagaggctgcagcagctgcag
agttcagccccaaacagcgaggccctggtcagggagatcagcgggcactggaagagacac
ctggagtgccttgacaagccaggagacacagaggaggacccagcagcagcagagtcagga
cctggggaggcatcgagctggacagctggtgtgatgactccaaacagcaaacaggccctc
agagtcacaggctcacctcagcagaaccaccagggccagaaccagacagaaggggaagcc
gaagacacagatgccactctggccgacagactgggtgaggccgaggagaggatcaaagtg
ctgcattcatctctgagcacagcccagacagatcttctggacctgcggtgtaaatacgac
caggagaaggccaacaaggcggaggaggtcggtgtgatcatgatgaatcttgagaaggca
aaccagaaagcagaaatggcccagagggaggtggagaggctaaaggaacaactggccagt
ccccggagcgccaccccagggagctgccatccaccagagggcactagtggggagaggggt
gatgtgttgccatccaagctggaggctaagctgatggctaaagaccgagagatcctcagg
ctactggaaaacgtacagagactacagttcgcactacagaaagtccaaaacacctcagcc
aatcagatcattgagctggaaagccagctggcctataagacagaagctattgagagatta
gaagctaaactgcaatcccagttggactatgaagagattaaaacagaactccgtatcttg
aaggtaatgaagctggcctcaacgaatggtagctcgtcccaggacactgcagaggctttt
ttgcgggacaaagaggcctttcttccctctcccaagtacctgatggataaggccagaatc
ttacacaacaatgatgaggaccgatcggaggagtcaggcagggagtcagacagggagtgg
ggcaggccctcagggtccttctcctcagtctcccaagtggatgagcgtacctctgccagc
cctggaccccccacaatggacgtctcctcctctagccacgacctcccccgccccttctct
gtgtccccctgctcaagggacaggctgtctgcggaccacgtcgtccacaagcagctcctc
tcctccccactctttaagaaggaatccggcagccccctcatggccttccccaccgccctg
tatgcagccaaagtcaccctaatttcagccaatcagggacctgcaggggccggcggcatc
gaggccggcctgcccagtgaccaatcggaaagcgggagctccactgcgggtgatgacgac
cagttggagacagcagagattgccttccaggtcaaagagcagctgctgaagcacaacatt
ggccagcgtgtgtttggtcactatgtgctgggcctatcacagggctcggtcagtgagata
ctggcccgacccaagccctggaggaagctgacagtgaaaggcaaggagcccttcatcaag
atgaaacagttcctgtctgacgatcagaacatcttggccctcaggaccatccaggtccga
cagagagggagcatcactcctcgcatccgaactcctgaaactgggtcagacgacgccatc
aaaaatatcttggagcaggccaagaaggagatccagtcccagagaggaggtgtgtctgga
acaggtgacattaaatcgtccctgggcagcccctccggcttgagcagtaatggggcgggc
ggcagctcagacgacaccatcaagaacatcctggagcaggccaggagggagatgcaggcg
cagcagcaggccctgatggagatggatgtctgtggtagggcctctgccaccagcgctggg
ccccaggtggagcgcctggggctccctgagccttccaaggtcctgcctttacccactttc
atcaaacaggaggaggggggcacggtgaccgtgtgcatggccaaccccatcagcagcccc
cagacccccctcagtgtcctctcccccgccgcctttgtccagaacatcatccgtaaagtc
aagtcggagatcggtgaggcggggacttacttcgaccagcactggtctgtggatcggggg
cccataggcatggtaggtggcgtagggggcggcagctctcggcccttcacctcagtgtct
ccctccctgtcctcctcctcgtcctcgggcccctcggccctgccccggccctggccccgg
ctggagaacggagagtgtctgcccaacagtgaggaggcgtctgcagccgaggaggacact
ggctcggggatggtacggtctgtggaagtaaaagtggagtcggacgtgtcagtgagtggg
gagtcacccggccctggtcgtggcctgtcctattacccatcatacctcccccgcaccctg
aagcccaccgtgccgccgctgacgccggagcagtatgagatgtacatgtaccatgaggtg
gacaccatcgaactcacccggcaggtcaaagagaagctggccaagaacggcatctgtcag
aggatctttggtgaaaaggtgctgggtctgtctcagggcagtgtgagtgacatgctgtct
cggcccaaaccctggagcaagctgacccagaaaggcagggaacctttcatccgcatgcag
ctgtggctgctggaccagctgggccaagcactcacccagcttcccagccaaagcctctct
cgagataaaagcccagtgacggcccagtcgtcgccctccccaccccccagcccagaggag
agccaccccagcccattggtggagcccgtcagccataccctggagagcagcaaagagaac
cagcagcctgatggcctgggcctgatgcccccccacccagaagaagggaaatccaccccc
agtctgctgtccctccaccagccccacacccccctgggcatccaggagctggtggcaatg
tccccagagctggacacatacgccatcaccaagaaggtcaaggaggtgctaacagacaac
aacctaggccagcggctgtttggggagagtatactgggcctcacccagggctcagtgtca
gacctgctctccaggcccaagccctggcacaaactcagcctcaaaggcagggagcctttc
gtccgcatgcaactgtggctcaacgacccgcacaacgtggacaagctgagggacatgaag
aagatggagaagaaagcctacctgaagaggcggtatgggctgctgagtaccggctcagac
agtgactctcccagtgcccgctctgagtgtgtgagcccagctctggcctcaatagacctg
tgtccctacagtcaggtgaagaagcccagggtggtgctaggggcggaggagaaggaggct
ctgaggaaggcctacctcctggagccatacccctcccagcacaccattgagatgctggcc
tgccagctcaacctcaaaaccaataccgtcatcaactggttccacaactacagcaggtcc
aggatgcgacgggaggtcctcatggagggtctccaggacaacgacacagacacagaacac
cacagctactctccctcggccatacagagccccatctcagacggagatgagaggaggctg
ctgcaccccgctggacgcaccccccaccccatccgccccctcagcgccaacacaccactg
cctcatgtcaaacaggaggccagtgagcgggaggacgagggagaggaggaggagaggaac
ggctacatcaaacagcctaagatccagtgtttctctatgggtgtccagttccctcagttg
aaaacggagcatgaggacctgatgggtggctgccgagagctacacctggctccacactat
cctcagagcctgaggcaggaagagggtatgagcagccaggctcaggggctcttccaggag
gcgctctccctcgatggtccccagagaaccagccagtccaggcacgaggttgacgactcc
agcaagtctcccgtggacccggtcagcttcaaggcctcgtctgagccctcccgcagcagc
ctggaggtctcactcaactccccctccgctgcctcttcgcccggcctcatgatgtccgtc
tcccctgtgtcatcttcctctgcacccatctccccatccctgcccaacccacccacgaca
agcaccaaccacagcctggaccctaaccccatgcctcccatccagagccccaagcccaac
aggagcgttcagagacgcaccgagaaaattgccaacctcaacagcatcatccacaggctg
gagagagcggctaaccgggaggagaccctggagtgggagttttag
DBGET
integrated database retrieval system
