Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139389949
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Entry
139389949 CDS
T10872
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139389949
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139389949
mRNA degradation factors
5'-3' decay
Decapping complex
139389949
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139389949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139389949
NCBI-ProteinID:
XP_070993099
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All DBs
Position
3:complement(18070389..18085947)
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AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTSGSLATAPQPDAQQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSADPDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacggagaacccaacatccatcatgggactgaacaagcccaatggg
cagtttagaggaccactcaaaccagttggactaacatcaggatccctggcaactgcccca
caaccagatgcccaacagaagggaggtaacattccccagggcagtgggggtatccggttt
ggcgatgactggaagaagtgcctacagcttccacagaaagactgcagatttagaacatca
gatgtgacatcgaccaaggggaatgagtttgaggactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggagaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatccttgcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaagccatg
gtgatggttcctactcgagagttagccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacaggaggcaccaacctgagggacgac
atcatgcgtctggacgagactgtgcatgtggtgatagccacaccaggcaggatcctggac
ctgataaagaagggagtggccaaagtggataaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggtcctgatcgaagacatcattagcttcctggct
aagggtcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgacactgaagggc
atcacccagtactatgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccattatcttctgtaactccacccagcgggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtatagaaaccgtgtgttccatgacttcagaaatggactctgcaggaacttg
gtctgcacggatctgttcaccaggggaattgacattcaagcggtgaacgtagtgatcaac
tttgacttccccaagaacgctgagacgtacctgcatcgcatcggcagatcagggaggttt
ggtcacctgggtctggccatcaacctgatcacctctgaggaccgcttcaacctgaagtcc
atcgaggaccagctggtgaccgacattaagcccatccccggcagcatcgacaagggcctg
tacgtggcggagttccactctgccgatccagacgcagaagacgagatcagaggcaaggac
ggcgagttaagcgcagcataa
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