Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390005
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Entry
139390005 CDS
T10872
Name
(RefSeq) glutamate receptor ionotropic, delta-2 isoform X1
KO
K05207
glutamate receptor delta-2 subunit
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139390005
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139390005
Ion channels [BR:
ocla04040
]
Ligand-gated channels
Glutamate (ionotropic)
139390005
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Gene cluster
GFIT
Motif
Pfam:
ANF_receptor
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
DUF6724
Motif
Other DBs
NCBI-GeneID:
139390005
NCBI-ProteinID:
XP_070993191
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All DBs
Position
30:1497953..2063918
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AA seq
1010 aa
AA seq
DB search
MKVVSAVLFLAIFWSQEWEPVNSDSIIHIGAIFDESARKDDEVFRMAVADLNLNNEILET
EKITISVEFVDGNNPFQAVQEACELMNRGILALVSSIGCMSAGSLQSLADAMHIPHLFIQ
RATAGTPRSSCPLITTRTRQDDYTLFVRPPVYLNDVILQVVSEYSWQKFIIFYDQEYDIR
GIQDFLDKTSQQGMDVSLQKVESNINMMITSMFRTMRVEELHRYRDTLRRAVLFMSPATA
KAFITEVVETNLVAFDCHWIIINEEISDQDVQELVMKSIGRLTLIRQTFPLPQNTSQRCV
KHNHRINTSLCDPKDPKAQTLEITNRYIYDTVLLLANTFHRKLEDRKWHSMASLTCIRKN
SKPWQGGRPMLDNVKKSGVSGLTGFLEFTDNGTNPNIYFEILGTNYGEDRGRGVIKLATW
DPVHGLNGTLTDRKLENNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQGYSIDVLDALS
NYLGFKYEIYVAPDHKYGSQQADGVWNGLIGELVAKRADMGLSALTITPERESVVDFTTR
YMDYSVGVLLRKAERTVDMFACLAPFDLSLWACIAGTVLLVGILVYLLNWLNPPRLPMGS
VSSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGVWWLFALIVLSSYTANLAAFLTIS
RIENSIQSLQDLSKQTELPYGTVLDSAVYEQVRSKAMNPFERDPMYSQMWRMINRTGGAD
NNVEESKEGIRKVKYGHFAFVWDVAVLEYVGINDEDCSFYTVGNKAPDRGYGIALQHGSP
YRDIFSQRILELQQNGDMDILKLKWWPRDSPCDLYSAVHTKHRGSALDIHSFAGVFCVLA
AGVVLSCLIAMVETWWTRRKGSRVPSKEDDKEIDLEHLHRRVNSLCTEDDSPHKQFSTSS
IDLTPLDMDSMPANRQALEQISDFRNTHITTTTFIPEQIQTLSRSLSAKAQQGFAFGPVQ
DHRTGGPFRQRAPNGGFFRSPIKTMSSIPYQPTPQPNFGYGNDPDRGTSI
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgtttcagcagtgttgttccttgccatattttggagtcaggagtgggagccc
gtgaattctgattcaatcatacacatcggggccatctttgacgagtctgccaggaaggat
gacgaggtgttccgcatggccgtggcggacctcaacctcaacaacgagatcctggagacg
gagaagatcaccatctctgtggagtttgtggacgggaacaaccctttccaggcggtccag
gaagcctgtgagttgatgaacagggggatcttggcgctggtcagctctatcggctgtatg
tcggcgggctcccttcagtctctggcggacgcgatgcacatcccgcacctcttcatccag
cgtgccactgccgggacccctcgctccagctgccccctcatcaccacccgcacccgccag
gatgactacaccctcttcgtgcgcccgcccgtctacctcaatgacgtcatcctccaagtg
gtcagcgagtacagctggcagaagttcatcatcttctacgaccaggaatacgatatccgt
gggatccaggacttcctggacaagacgtctcagcaaggcatggacgtgtcgcttcagaag
gtggagtccaacatcaacatgatgattaccagcatgttccggaccatgagggtggaggag
ctccaccgctaccgggacacgctgcgccgggccgtgctcttcatgagccccgccaccgcc
aaggccttcatcactgaggttgtggagacgaacctcgtggcattcgactgccactggatc
atcatcaatgaggagatctcagaccaggacgtccaggagctggttatgaagtctatcggg
cgtctgactctgatcaggcagacattccccctgccccagaacaccagccagcgctgtgtc
aagcacaaccaccgcatcaacacctccctctgtgaccccaaagaccccaaggctcagaca
ctggagataaccaaccgctacatctacgacacggtgctgctattggccaacaccttccac
aggaaactggaggacaggaagtggcacagcatggccagcctcacctgcatccgcaagaac
tccaagccctggcaaggcgggcgccccatgctagacaacgtcaaaaagtctggagtgagt
ggtctgaccggcttcctggagtttactgacaacggaaccaaccccaacatctactttgag
atcctggggaccaattatggcgaggacagggggaggggtgtcatcaagctggccacctgg
gatccagtgcatggcctcaatggaacactaactgacaggaagttggagaacaacatgaga
ggtgtggttctgcgcgtggtcactgtgctggaggagccctttgtgatggtgtcagagaat
gtccttgggaagccaaagaagtaccaaggctattccatcgacgtgctggatgctctctcc
aactacctgggcttcaagtacgagatctacgtggcccctgaccataagtatgggagccaa
caggctgacggggtctggaacggactaatcggagagttggttgccaagcgtgctgacatg
ggtctctcggctctcaccatcacaccagagcgggagagtgtggtggactttaccacgcgc
tacatggactactcggtgggcgtgctgctcaggaaggctgaacgcaccgtggacatgttc
gcctgcctggcgccctttgacctgtcgctatgggcatgcatcgcgggcacggtgctactg
gtgggcatactggtctacctgctcaattggctcaacccgccgcgcctgcccatgggctcc
gtctcctccaccaccctctacaactccatgtggtttgtctacggatcattcgtccagcag
ggtggtgaggttccgtataccaccctggccacgaggatgatgatgggggtatggtggctc
tttgctttgatcgtcctctcctcctacacggccaacctggctgccttcctcaccatcagc
cgtatcgagaactccatccagtctctccaggacctgtccaagcagacagagctgccctac
gggacggtgttggactcggctgtgtacgagcaggtgcgcagtaaggccatgaaccccttt
gaaagggaccccatgtactcccagatgtggcgtatgatcaaccgcaccggaggggccgac
aacaacgtggaggagtccaaggagggcatccgcaaggtgaagtacggccattttgccttt
gtgtgggatgtggcagtgctggagtatgtgggcatcaacgatgaggactgctccttctac
actgtggggaacaaggcaccagaccggggatacggcatcgccctgcagcacggcagtcca
tacagggacatcttctcccagaggatcctggagctgcagcagaacggggacatggacatc
ctgaagctgaagtggtggccccgggacagcccgtgtgacctgtactctgcggtgcacacc
aaacaccgcggcagcgccctggacatccacagctttgccggcgtgttctgcgtgctggcg
gcgggtgtggtgctctcctgtctcatcgccatggtggagacctggtggacaaggaggaag
ggctcacgagtcccctccaaagaggatgataaggagatcgacctggagcaccttcaccgc
cgggttaacagcctgtgcacagaggacgacagcccccacaaacagttctccacctcctcc
attgacctgacgccactggacatggactctatgccggccaaccggcaggccctggagcag
atcagcgacttccgaaacacgcacatcaccactaccaccttcatccccgagcagatccag
accctcagccgcagcctgtctgccaaggcccaacagggctttgcctttggtcccgtgcag
gaccaccggactggggggcccttcaggcagagagcccccaacggaggcttcttccgcagc
cccatcaagactatgtcctccataccctaccagcccactccccagcccaacttcggctac
ggcaacgacccagaccggggcacgtccatatga
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