Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390010
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Entry
139390010 CDS
T10872
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139390010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139390010
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139390010
Spliceosome [BR:
ocla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139390010
Complex C
U5 SnRNP specific factors
139390010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
139390010
NCBI-ProteinID:
XP_070993212
LinkDB
All DBs
Position
30:16384999..16410844
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMQGEKRAKRRKRDEDGHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMEADPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMAPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVVIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHNSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVSSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTLEHIKRCTDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGI
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgttactgcgcgtagcttgcagtatgaatacaaagcgaactctaacttggtc
ttacaagcggaccgttcgctcattgaccgcacaaggcgcgatgagcccacgggagaggtg
ctgtccctggtgggaaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgcaaggagagaaacgggcaaagaggaggaagagagatgaggatgggcacgac
atgaataagatgaagggcttcaccctcctgtcagaaggcattgatgagatggtgggcatt
gtgtacaagcctaagaccaaggagactagggagacctacgaggtccttctcagcttcatc
caagcagccctgggagatcagccaagagacatcctgtgtggagcagctgacgaggtgctg
gctgtgctgaagaatgacaagatgagggacaaggagagacggcgtgaagtggagcagcta
ctagggcctgcagatgacacacgctaccacgtgttggtcaacctgggcaagaagatcagt
gactacgggggtgacaaggagctccagaacatggatgacaacattgacgaaacatacggg
gtgaacgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgatggctcagatgaagagagtgaaggagaggaagcagacttgggctgcaccctg
acggccaaccttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacattgatgccttctggctccagcgtcagctcagccgtttctatgacgatgccata
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgacaga
gaatgtgagaaccagctggtcttactgttgggattcaacactttcgacttcatcaaaatc
cttcggcagcatcggcggatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagattataggaaagatggaggcagatccagacttgtccaaagttctt
taccagctgcaggagactgagaaggaggatattattagggaggagcgatctcgcagggag
agagtgaggaagtctcgcgtggacaatgacttggagtctatggacatcgaccacggagag
tccatggcccctaaacaactgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctaccagacggctccttccgcaagcagcgcaaaggc
tacgaggaggtgcacgttcctgccctcaagcccaagcccttcgctgacgatgaggtgctg
gtggtcattgagaagcttcccaagtatgcccaggcaggttttgaaggattcaaaacactg
aaccgcatccagagcaagctgttcaagactgctatggagaccgatgagaacctgcttgtg
tgcgctcctacgggggcaggaaagaccaacgtggcccttatggcaatgctgagggagatc
ggcaagcacatcaacctggacggaaccatcaacttggacgacttcaagatcatctacgtt
gctcctatgcgctcactcgtacaggagatggtgggaagctttagtaagcgtctggccagt
tacggcatcacagtgtctgagctgactggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacatcatcacgcgcaaaggaggc
gagcgcacctatacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gacgaccgcgggccagtcctagagtctctggtggccaggaccatccgcaacgtggagctg
acccaggaggacgtgcgtctgctgggtctcagtgccaccctgccaaactacgaggacgtg
gccacctgcctgcgtgtggaccccgctaagggactcttctacttcgacaacagtttccgc
ccagtgcctctggagcagacgtatgtgggcatcactgagaagaaggccatcaagcgcttc
cagatcatgaatgagatcgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagactgggaagacggcccgggccatcagggacatg
tgtctggagaaggatactctggggctgttcctgagggagggctcagcctccaccgaggtc
ctcaggactgaggcagagcagtgtaagaaccttgagcttaaggacttgctgccttacggt
tttgccatccatcatgctggtatgaccagagtggaccgtaccttggtagaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgctcatactgtcatcatcaaaggcacccaggtgtacagcccagagaaaggccgatgg
acagagctgggagccctggacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcatcctgatcacatcccacggagagctgcagtactacctgtct
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagatatgctc
aacgctgagatagtactgggcaatgtgcagaatgctaaggatgcagtgaactggctgggc
tacacctatctgtacgtgcgtatgctccgtaaccccaccctgtacggggtctcccatgac
gaccgcagctctgaccccttgctagagcgccgcaggatggacctgatccacactgcagcc
aacgtgctggacaagaacagcctggttaagtacgacaagaggaccggcgccttccaggtt
actgacctgggtcgcatcgccagtcacttctacataacccacaactccatccagacctac
aaccagctgctgaagcccacccttagtgagattgagctgttccgcgtgttctccctctcc
tcagagttcaggaacatcactgtcagagaggaagagaagctggagctgcagaagcttctg
gagagagttcccattccagtgaaggagagcattgaggaacccagtgctaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggctttgctctgatggctgacatg
gtctatgtgacacagagtgctggaagactgatgcgagcaatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaagaccatgaacctctgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgagaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgagttgatccgcatgcccaagatggggaagaccatccacaagtacgtgcaccagttc
cccaaactggacctggccgtccacctgcagcccatcacccgttccacactgaaggtggaa
ctcaccatcacaccagacttccagtgggatgacaaggtgcatggctcatcggaggccttc
tggatactggtggaggatgtggacagtgaggtcatcctacaccacgagtacttcctgctc
aaggccaagtacgcccaggacgagcacctggtcaccttctttgtgcccgtgtttgagccc
ctgcccccgcagtacttcatccgtgtgtcctcggaccgttggctatcctgtgagacgcag
ctgccggtgtctttccgccacctgatcctgccagagaagtacccccctcccactgagctg
ctggacctgcagcccctgcctgtgacagctctgcgtaatgccgccttcgagaccctctac
cagaacaagttccccttcttcaaccccatccagacacaggtgttcaacgctgtgtacaac
agtgacgacaacgtgtttgtgggagccccgaccggcagtgggaaaaccatctgtgctgag
tttgccatcctgaggatgctgctgcacaacgcagagggccgctgtgtgtacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagaagttccaggatgctctg
aataagaaggtggtgttgctgacgggagagaccagcactgacctgaagctgctgggaaag
ggtgacatcatcgtcagcaccccggacaaatgggacatcctgtcacgccgctggaagcag
aggaagaacgttcagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaatggacctgtgttggaggtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcttccctgtccaacgccaaagacgtggcc
cactggctgggatgcagtaccaccgcaacctttaacttccaccccaacgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcctgctgtcc
atggccaagccagtgtaccacgccatcatgaagcactccccctccaaaccggccgtggtg
ttcgtcccatcccgccgacagacccgcctcaccgccattgacatcctcaccttctgtgct
gctgacgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctgaaggagacgttggccaatggggtgggctacctgcac
gagggcctgtccaccacagagcgcaggatcgtggagcagctcttcaactcaggtgcagtc
caggttgtggtggcttcacgctccctctgctggggcaccaacatctctgctcacttggtt
gttatcatggacacccagtattacaacggcaaaatccatgcctacgtggactaccctatt
tacgatgtgctccagatggtgggcaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgtcagggttccaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgtatgcacgaccacttcaacgctgagatcgtc
accaagacggtggagaacaaacaggacgcagtggactacctgacctggaccttcctgtac
cgccgcatgacccagaaccccaactactacaacctgcagggcatgtctcaccgtcacctg
tcagaccacctgtcagagctggtggagaacaccctgcatgatctagagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgatcgctgcctac
tactatatcaactacaccaccatcgagttgttcagtatgtccctgaacgccaagaccaag
attcgtggattgattgagatcatctccaatgctgcggagtacaagaacattcccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccacacaaactgaacaac
cccaagttcaacgacccacacgtgaagaccaatctgctgctgcaggctcacttgtccagg
atgcagttgagcgctgagctgcagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaacggctggctgagccctgcgctggct
gctatggagctggcccagatggtcacccaggccatgtggtccaaggactcctacctcaaa
cagctgccttacttcaccctggagcacatcaaacgctgcacagacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acacagatagctgacgtggctcgcttctgtaaccgctaccccaacattgaactgtcctac
gaggtggcagagaaggagaatatcaagagtggaggtccagttttggttctggtccagttg
gagagagaagaggaggtgactgggcctgttattgctccactcttcccccagaaacgtgag
gagggctggtgggtggtaattggagaccccaaatccaacagcctgatctccatcaagagg
ctgacactgcagcagaaggccaaggtgaagctggactttgttgcaccagtgctgggcatt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
ttcagtgtggacgtgaaggaggcagaaagcgatggagacagtgactcagactaa
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integrated database retrieval system
