KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390039
Entry
139390039         CDS       T10872                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030  DNA replication
ocla03410  Base excision repair
ocla03420  Nucleotide excision repair
ocla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139390039
   03410 Base excision repair
    139390039
   03420 Nucleotide excision repair
    139390039
   03430 Mismatch repair
    139390039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocla03032]
    139390039
   03036 Chromosome and associated proteins [BR:ocla03036]
    139390039
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139390039
DNA replication proteins [BR:ocla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    139390039
  DNA Replication Termination Factors
   ELG1-RFC complex
    139390039
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    139390039
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     139390039
  Check point factors
   HRAD17(Rad24)-RFC complex
    139390039
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_14 AAA_22 AAA_24 AAA_16 AAA_assoc_2 RuvB_N ResIII DEAD AAA_5 ATPase_2 PhoH AAA_7 AAA_30 AAA_19 AAA_2 DUF815 TIP49 Mg_chelatase bpMoxR DNAX_ATPase_lid Thioredoxin_6
Other DBs
NCBI-GeneID: 139390039
NCBI-ProteinID: XP_070993252
LinkDB
Position
30:35890395..35899055
AA seq 335 aa
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKCISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSD
IANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcatcgattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tgtatcagtgaggacaggctgccacatctcttgttctatggacctccaggcacagggaaa
acatctactgttctcgcctctgccaagcagctctacaaggagaaggagttcaacgccatg
gtcctggagcttaatgcgtcagacgacagaggtatcgatgttgtacgaggacccatcctg
agttttgccagcaccaggaccatattcaagaagggtttcaagttggtgatactggatgag
gctgatgccatgacccgggatgcccagaatgcattgcggcgagtcattgagaagtacaca
gaaaacaccaggttctgtttgatttgtaactacctgtctaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggacccctgtctcaggaccagatgatacccaggctg
gagtttgttatccagcaggagagcattgatgtaactccagatggaatgaaagctattgtg
accctgtcatcgggagacatgagaaggtccctcaacatactgcagagcaccagcatggcg
tatgggaaggtcaccgaggataatgtgtacacctgcactggtcacccactacgatccgat
atcgccaacatcctggactggtcgctaaacaaggacttcacttccgcttacaaccagatt
ctccagctgaagacgctgaagggcctagccctgcatgacatcctgactgaggtccaccta
ctgatccacagagtggacttccctcctgccattcggatgggcttgcttatcaagttggca
gacattgagtaccggctggcctctggaactagtgagaagatccaattgagttcgatggtg
gcggctttccaggcagtgagagacatcgtggtcaatgaggccgcctag

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