Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390505
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Entry
139390505 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit beta-2-like isoform X1
KO
K05181
gamma-aminobutyric acid receptor subunit beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139390505
04082 Neuroactive ligand signaling
139390505
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139390505
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139390505
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Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
139390505
NCBI-ProteinID:
XP_070993749
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Position
31:complement(9076866..9162230)
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AA seq
537 aa
AA seq
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MGKLRKHRFGMLTFSFFCTFICCAQSAKDLRDPSNMPLVKDTVDRLMKGYDIRLRPDFGG
APVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYSEIALNLTLDNRVADSLWV
PDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLE
IESYGYTTDDIEFYWRGGDGAVSGVERIELPQFSIVDYKLVSKNVVFSTGSYPRLSLSFK
LKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLP
KIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKRAAEKLAVVNNEKLRPDP
NKWMVGNVVQRDDALYARMKQREIDAYDTMWDPIFVDDAALGLGEQRNKMTTSLTDDNIL
FGSLEMKNEMGGVPPELSRSLGPGGLGDPRNTMLAYDSSTLQYRRAAMARQNYGGGPHSA
LERHATQKKSRLRRRASQLKVNIPDLADVNSIDKWSRMIFPTVFSFFNVIYWLYYAH
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggggaagctcaggaaacaccgctttggaatgttgaccttttccttcttttgtactttt
atctgctgtgcgcaaagcgccaaagatctgagggatcccagtaacatgccgctggttaaa
gacacggtcgacagactgatgaaaggctacgacattcggttgaggccagatttcggaggt
gcgccggtggccgtggggatgaatatagacatagccagcatagacatggtgtctgaagtc
aatatggactacacgttgaccatgtacttccagcaggcctggcgggacaagcgtctgtcc
tactctgagatagccctcaacctgacgctggataacagggtagccgactcgctctgggtt
cccgacacctacttcctcaacgataaaaagtccttcgtccacggcgtcacggtcaagaac
agaatgatccgactgcatccggacggcaccgttctctatggactccggatcacaaccaca
gcagcctgtatgatggatctgaggcggtatcctctggatgaacagaattgtacactggag
atcgagagctatggctacaccactgatgacattgagttctactggcgagggggagatgga
gctgtgtctggggtggagagaatagagctgcctcagttctccatcgtggactacaaactg
gtctccaagaatgtagtcttctctacaggttcctacccacgtctgtctctgagcttcaag
ctgaagaggaacatcggctactttatcctccagacctacatgccctctatcctgatcacc
atcctgtcttgggtctccttctggatcaactatgatgcctccgctgccagagtggccctg
ggtatcaccacggtgttgaccatgaccaccatcaacacccatctgagagagacgctccct
aagatcccctacgtcaaggccatagacatgtacctgatgggctgcttcgtgttcgtcttc
ctggccctgctggagtacgccttcgtcaactacatcttcttcggacgggggccccagagg
cagaagagggccgccgagaaactagccgtcgtcaacaacgagaaactccgacccgatccc
aataagtggatggtgggaaatgtagttcagagagatgatgctctgtatgccagaatgaaa
cagagggaaattgacgcgtatgacacgatgtgggatcccatctttgtggacgatgccgca
ttaggactaggcgagcaaagaaataagatgaccacctccctgactgatgacaacatcctg
tttggttccctggagatgaagaacgagatggggggtgttcctcctgagctgtccaggtcc
ctgggccctgggggtctgggtgacccgcgcaacaccatgctggcctacgacagctccacg
ctgcagtaccgcagggccgccatggcccgacagaactacgggggcggacctcacagcgcc
ctggagcgccacgccacccagaagaagtcccgcctacggagacgggcctcgcagctcaag
gtcaacatccctgacctggctgatgtgaactctatcgacaagtggtccaggatgatcttc
cctaccgtgttctccttttttaacgtgatctactggctctactacgctcactaa
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