Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390670
Help
Entry
139390670 CDS
T10872
Name
(RefSeq) UV-stimulated scaffold protein A
KO
K23720
UV-stimulated scaffold protein A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
139390670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139390670
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
139390670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
INTS1_R4
Cnd3
LBD_receptor
DUF1195
Motif
Other DBs
NCBI-GeneID:
139390670
NCBI-ProteinID:
XP_070994044
LinkDB
All DBs
Position
31:complement(18800691..18824780)
Genome browser
AA seq
733 aa
AA seq
DB search
MDHAQRDKLSELVEELTTSGEPQLNSNKLKEVKKICKVSNDYIEHFYHLTMTQLAQEHAE
IRLSAFQMVSELFTRSHHFRVLLVDNFQEFLDLTVETDSDEPLPPPKEVARKLKTIAIKT
VQEWQATYGEAYKKLALGYHFLKQVKKVDFHDVQARTLAERKREEERQKRLERIYKDKVE
KATKEMEDASEEIEECLTEINNCIKLLLPAEFDLSDLDTSTPANNSTVSVSSVPNEKAST
SSDLDEQPCCSKDLELQREPKNPETSTATKTNEEKEEEDPSDEDSDIEDVLVEDAFIRNT
GLISHKYSLDLNLSTDLKLKETEENEAVVNTMKDLHKLLSTKHLPVVQYWVQVFTKAGVP
EPLLRRAIDLKSSLERALQKHEDLHIDYKARHRRVMKAPEGSDDDDDDFEEVPEKEGFEP
HIPDHLREEYGLEPSPSTSMACKKPVQPPVKCPATGASHTLSRPRKRATDEEQDPTCAAA
TLRLFKQRLLPQPPSTSSAAGGHVDPTYQASEDRDKAPVIPFGLDLYYWGEEQPTAGKII
KNSSQHQFWVPNEVEEEVENKELAAQMKSRYITFAGRFQPVKHRCKTPMPNGGLCERQDR
VKCPFHGPIIPRDELGKPTNPEDAVRLEKEEWKRREDQPDWRDPELMRDIELATGEDLGS
SKTFGKGKKGKGKGKKKKFPNLSDLKKGVNTSRSRLEKKVFNPSSMRRVTDVMNKMDKLK
HAKFANQFNYALN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggaccacgcacaacgagataagttgtcagagctcgtggaagagttgaccacatctggg
gaaccacaactaaattcaaataaactgaaggaagtgaaaaagatatgcaaagtttccaac
gactacattgagcacttctaccacctgaccatgacgcagctggcccaggagcatgccgag
atccgcctgtcagccttccagatggtcagtgaactcttcacccgctcacaccacttcagg
gtcctgctggtagacaacttccaggagtttctggacctgacagtggagacggactcagat
gagcctctgccaccacccaaagaggtggctcgaaagctgaagaccattgccatcaaaact
gtgcaagaatggcaggccacttatggagaagcctataagaaactggccttgggctaccac
tttctcaagcaggttaaaaaggtggactttcatgatgttcaggccagaacactagctgag
aggaaacgagaggaggagagacagaaaagactggagaggatttataaagacaaagttgaa
aaggccaccaaggaaatggaagatgcctcagaagagattgaagagtgtcttacagagata
aacaactgcataaagttgcttctgcctgcagagtttgacctcagtgacctagatacctca
actccagccaataattcaaccgtttctgtctcttctgtgcctaatgagaaggctagcacc
tccagtgacctagacgaacagccctgttgtagtaaagacctggagctccagagggaaccc
aagaatccagagacaagtacagcaacgaaaaccaatgaggagaaggaggaagaggatcct
agtgatgaagacagcgatatagaggatgttctggtagaagatgcattcatacgcaacaca
ggactcatatctcacaaatacagcctggacctgaacctctccacagatttaaagctaaag
gagacagaggaaaatgaagcagtggtgaacaccatgaaggacctgcacaaattgctcagc
actaaacacctgcctgtcgtccagtactgggttcaggttttcaccaaggcgggtgtgcca
gaaccgctcctcagacgtgccatagacttgaagtcgtcgctggagagagctctgcagaaa
catgaagacctgcacattgactacaaggccaggcatcgcagagtgatgaaagcgccggag
ggcagcgatgacgacgatgatgactttgaggaggttccggagaaggaaggttttgaaccc
cacattccagaccatctacgggaggagtacggtttagagccgtccccctctacctctatg
gcctgtaagaagccggtgcagcctccagtgaagtgtcctgcaacaggagcctctcacacc
ctctccagacccaggaagagagccactgacgaggagcaggaccccacctgtgcagccgcc
acactccgcctcttcaagcagcgcctcctaccccagccacctagcaccagctctgcagca
ggaggtcatgtggaccccacataccaggctagtgaggacagggacaaagctccagtcatc
cccttcggtttggacctctactactggggagaggagcaacccactgcaggcaaaatcatc
aagaatagctcccagcaccagttctgggttcccaacgaggtagaggaagaggtggagaat
aaggagctggctgcccagatgaagtccaggtacatcacgttcgctggccgcttccagccc
gtcaagcacaggtgcaaaacccccatgcccaacggaggcctctgtgaacgccaggaccga
gtcaagtgtcctttccatgggccgatcatcccacgagacgagctgggaaaacccaccaac
cctgaggacgctgtgcggctggagaaagaggaatggaaacgtagagaggaccagcctgac
tggcgggaccctgagctgatgagggacatagagcttgccactggggaggacctggggtcc
tccaaaacctttgggaagggcaagaaaggcaaggggaagggcaagaagaagaagttcccc
aacctcagtgatctgaagaagggtgttaacacttcacgctccagactagagaagaaggtt
ttcaacccgagctccatgaggcgagtgacagacgtcatgaataaaatggacaaattgaaa
cacgcaaagtttgcaaaccaatttaattatgcactgaattaa
DBGET
integrated database retrieval system
