Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390718
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Entry
139390718 CDS
T10872
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139390718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139390718
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
139390718
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
139390718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
TniB
AAA_18
AAA_22
MMR_HSR1
CbiA
Motif
Other DBs
NCBI-GeneID:
139390718
NCBI-ProteinID:
XP_070994139
LinkDB
All DBs
Position
31:complement(32464653..32468923)
Genome browser
AA seq
445 aa
AA seq
DB search
MATEGPEKTGEEAAGAGAGAGGGGTRFDLEKETELRFEVEAGEKVQLELLTGLAEVFGSE
LNRNKKYTFPPGSKIAVFTWQGCSVSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAE
RDNERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVELDVGQSGVSVPGTMSALCI
ERPADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRREARDDKIREYFYGFRGVSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVTPGRDLTHHVLSVSCADEGEEVAGGVRRGLLESPVCGFIVVTNVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgagggcccagagaagactggtgaggaggctgcgggggctggggcgggtgct
ggtgggggggggacgaggttcgacctggagaaagagacagagctgcggttcgaggtggag
gctggggagaaggtgcagctggagctgctcacgggattggctgaagtctttggttcggag
ctcaaccgcaacaagaagtacacgttcccaccgggctccaagatcgctgtgttcacctgg
cagggctgcagtgtttctctctcagggaagacagaggtggcgtacgtatcaaaggacaca
cccatgctgctctacctgaacacccacgccgcactggaacagatgagacgacaggcggag
agagacaacgaaaggggcccacgggtgatggtggtggggcctacagacgtggggaagtcg
acggtgtgcaggctgttgctgagctacgctgtcagactgggcaggaggcctacactggtg
gagcttgacgtgggccagagtggggtgtcagtcccgggcacaatgtcagcgctgtgtatt
gagcgtcccgctgacgtggaggaggggtactcagtacaggctccgctggtctaccacttt
ggctccaccacaccaggaaccaacatcaaactctacaacaagttgacatcatgtctggct
gaggtgttttcccagcgctgtgaggtgaacaggaaagccagtgtgggcggctgcatcatc
aacacctgtggatgggtaaagggttctggctaccaggccctggtccactgcgcctcagcc
ttcgaggtggatgtggttctggtgctggaccaggagaggctctacaacgagctgaagcgg
gacctgccgcatttcgtccgagtcgtgctgttacccaaatccggaggggtcgtggagcgc
tccaaagactgccggcgcgaggctcgggacgacaagatccgggagtacttctacggtttc
cgcggtgtctcgttctaccctcacgccttcgacgtgcgcttttctgacgtgcgcatctac
aagatcggagcgccatccatccccgattcgtgccttcctctggggatgtcgcaggacgat
acccagctgaagcttgtccctgtgaccccaggtcgcgatctcacgcaccacgtactgagc
gtaagctgtgccgatgagggggaggaggtggctgggggggtgcgcaggggcttgctggag
agcccggtgtgtgggttcattgtggtgactaacgtggacacacaggcacaggtgatgact
gtgctctcgcccgccccaagacccctccccagacacacactgctcatcatggacattcgc
tttatcgacctcaaatag
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