Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390748
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Entry
139390748 CDS
T10872
Name
(RefSeq) PDZ and LIM domain protein 3b isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139390748
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139390748
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
139390748
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
139390748
NCBI-ProteinID:
XP_070994190
LinkDB
All DBs
Position
31:18220736..18248534
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AA seq
347 aa
AA seq
DB search
MPQNVVLDGPAPWGFRLNGGKDFNQPLTITRVTPGSKASLANLCPGDIILAIEGVSTECM
THSEAQNKIKDPASRLGLKIERPETKMWSPQVTEDGKANPFKLNLEAEQQDLGYFEHKFN
VRPKLFLPAGQSECPPPQGLMGNGHQTVVTLSPPDPPLSANSGTDQPLAPSAQYNSPINL
YSEANVSAAQQLAQVTLVEEQVPLSGKTLSSIKESHVYRMLQDDQDRPHEPRQSGSFKAL
QEHVETDGAKPLITRSVRAPVTKPPTPAGSLQKLPLCDKCGNGIVGTVVKAREKFRHPGC
FVCSDCKVNLKQRGYVFVEGQLYCETHARARTIPSEGHDVITVYPTA
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgccccagaatgtggtcctggatgggccagccccctggggcttcaggctcaatggaggg
aaggacttcaaccagcccctgaccatcaccagggtgacgcctggcagcaaagcctcgctg
gccaacctgtgccccggtgacatcatcctggccatagagggtgtgagtacagagtgcatg
actcacagcgaggcccagaacaagatcaaagaccctgcctcccggctcggcctcaagatt
gagaggcctgagaccaaaatgtggtccccccaagtcacagaggatgggaaagcaaaccca
ttcaagctcaatttagaggcagaacaacaagacctgggctactttgaacacaagtttaac
gtcaggcctaagctcttcttacctgcaggccaaagcgagtgccctcctccgcaaggcctg
atgggaaatggccatcagacggtggtcaccctctccccccctgaccctcccctgtctgct
aactccggcacagaccaacccctggcccccagtgctcagtataactcccccattaacctg
tactctgaggccaacgtctcggccgctcagcagctagctcaggtcaccttagtagaggaa
caggtccctctaagtggtaagacactgtcctccattaaggagtctcatgtgtaccggatg
ctccaggatgaccaggataggccacatgaaccacgtcagtcaggctcctttaaggctctg
caggaacacgtggagactgatggagcaaagccgttgattactagaagtgtaagagctcca
gtgacaaagcctcctacacctgcgggatcgctacagaaactacccctctgtgacaagtgt
ggaaacggcatagtaggcacagtggtgaaggccagagaaaagttccgccaccctggatgt
ttcgtgtgctccgactgcaaagtcaacctgaagcagaggggctacgtctttgtggagggg
cagctgtactgcgagacccacgcccgcgcccggacgataccttcagagggacacgatgtc
atcaccgtttaccccacggcttga
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