Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390985
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Entry
139390985 CDS
T10872
Name
(RefSeq) PHD finger protein 6
KO
K23310
PHD finger protein 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139390985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139390985
03009 Ribosome biogenesis [BR:
ocla03009
]
139390985
03036 Chromosome and associated proteins [BR:
ocla03036
]
139390985
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
139390985
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Other ribosome biogenesis factors
139390985
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
NuRD complex
139390985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
PHD_NSD
DUF7135
Motif
Other DBs
NCBI-GeneID:
139390985
NCBI-ProteinID:
XP_070994529
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All DBs
Position
31:17418774..17425978
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AA seq
367 aa
AA seq
DB search
MSAQRKGAAAKLRKCAFCRTNRDKECGQLLVSDNQKVAAHHKCMLFSSALVTSHSDCNEN
IGGFSVQDVRKEIKRGNKLMCWSCHRPGATVGCDVKTCRRTYHYYCAVWDKAQVKENPSQ
GSYLVYCRKHRDASQDASEDEQEQGGVANDSDSSPPRSRGRGRLEKERIKVGSRGQSEDT
RSTSSQGVDDESSSHRDRSPLRGSGDGGQRCGFCHSGEEENEMRGVLHADNAKKVAAHYK
CMLFSSGTVQLTTSSRAEFGNFDIKTVIQEIKRGKRMKCTLCTQLGATIGCEIKACVKTY
HYHCGLQDKAKYIENMARGIYKLYCKNHSGNEERDEEDEERESRNRERAAIDHGGTLPLP
PPQINGN
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcacagaggaagggagcagcagcaaagctgcgaaaatgtgccttctgcaggacg
aaccgggacaaggagtgtggacagctgctagtgtcagacaaccagaaggtggcagcccac
cataagtgcatgcttttctcctccgccctggttacatctcactcagactgcaacgagaac
atcggagggttttctgtccaggacgtgagaaaggagatcaagagggggaataaacttatg
tgttggtcctgccatcggcctggtgccactgttggctgtgatgtgaagacatgccggcgg
acgtatcactactactgcgcagtatgggacaaggcccaggtcaaagagaatccctcacaa
gggagctaccttgtgtattgtcgcaaacaccgggatgcctcccaggatgccagtgaagat
gaacaggaacaaggaggtgttgccaatgactcagactcctcccctccaaggagtaggggg
cgtgggagattagagaaagagcgaatcaaagttggatcccgtggccaatcagaggacaca
cgctcgacctcctctcaaggtgtagatgatgagagctcctcgcatagggacaggtcccct
ctgaggggctctggggatggtggccagcgctgtggcttctgccactccggagaggaggag
aacgagatgcggggtgtgttacatgcagataatgcaaaaaaggttgctgcacattacaag
tgcatgctgttctcatcgggaaccgtccaactcactacctcctcacgggctgaatttggg
aactttgacatcaaaacagtcattcaggaaatcaagagggggaagagaatgaaatgtacc
ctctgtacccagttgggagccactattggctgtgagatcaaagcctgtgtgaagacctat
cattatcactgcggcctgcaggacaaggccaagtacatagagaacatggctcgtggcatc
tacaagctgtactgtaagaatcacagtgggaatgaggagcgggatgaggaggatgaggag
agggagagtcgcaacagagagagggcggccattgatcacgggggaacactgcctctgcct
ccgccacaaatcaatggcaactag
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