Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391101
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Entry
139391101 CDS
T10872
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139391101
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139391101
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Motif
Other DBs
NCBI-GeneID:
139391101
NCBI-ProteinID:
XP_070994721
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Position
31:complement(35207098..35227851)
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AA seq
1184 aa
AA seq
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MLDRTVTSHTVMLLALVLWLISGAQSSDPAPLTVMYQVWEEQPVGTRVGRLVDDLRQRGE
TGVLEDFQVVEHGQALPFSIEVRDGTVATLGQLDREELCRGSDLCELAFSVLYRKGGVIH
FLRVRVEVMDLNDHSPTFPSSQQEVEISEMATLRMRIPLDRAVDPDAGPNGLQTYSLSVN
QHFALDVRSAVDGPKQAELVVIKELDREVHSSFELTLVAWDKGNPPRSGSTLVQVNVLDS
NDNSPMFEDSTPTVELAEDTARGTSVINLKATDPDQGANGEVEYSLSKHAPPEVQKLFSI
HPQSGVVTLKGQLDYEAKHFYEVDIQARDLGPNAIPSHCKLHIKLRDVNDNAPRIHVTWT
PPDSPVATVLEGAPEDTFLALVMVSDADSGDNGNVHAHIQHGSGHFRLKKIHGDNYMIVT
NGTLDREKVMEYNLTLLAQDYGDPPLSCVRHLVVHVLDENDNAPVFSKSHYRASFKENNT
VGLQVLKVEANDVDIELSGRVSFSIRESNELGPPTASFAIHPTSGVVSAQQSLDYEESPT
YSFIVEAIDHGHPPLTSTATVLIEIQDVNDNYPVIKEPMPKKGIAFVSVPVNEEKGEIVT
QLGDGAEEGSTDPHTGRSVQNGFMGFLATTIKANDPDSGLNGRLSYMITDGNPTGLFRLN
DTTGQLYVNTTNATELIGKTFKVDIAVSDKGSPRLLTKFTLEVAFINLRDHLKNSAPGNH
GQLSFTMMVAICLGASCILLLLTVALVTTFCRPTKRDNHSYNCRTAESTYTSHPRRPQKN
IRKTDIQLVPVLRGRREDPPEDDESQPLSPMLLVVEEQNTETQYSVANSMNPTVHSQAYP
EGGSTLPVSHSRTLRKPGSIELDGTLPWTPAIPYRTLRKARNPSSSSSLNQTSTLRRHGN
SEIQVSPDVEVPETSSQVTTLRRPKNTDTRSGLDAEDHRRMLRNLVRLSMAAFGENSIEL
SAASPEVQQVSQLLSLLHQGQLQPRPNFRGNKFSQRAGRSYAQDTDWQSTKDSGHGESEA
GDMDWDMGRDSPVDPLLEEGLNNLLNNPDDVFADIEDPAWMSRLSLPLTADYHENVFVPN
GPPSPETHCSPDTLDSASFSTFGKKPEDGSLGGALISEVNTLFNMLLTQKGDSQPRPSPD
VLYRLSATYRRSLGLEGDTAAAGSANIQRNSVNPEKRSPLAQCP
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgctggacaggacagtaacatctcacacagtcatgctgctggctctggttctgtggctt
atttctggggcccagtcttcagacccggccccattaactgtcatgtaccaagtctgggag
gagcagcctgtgggcaccagggttggccgtctggtcgatgacctgcgtcagagaggcgag
accggggtactggaggatttccaggtcgtggagcatggtcaagccctgcctttctccatt
gaagtaagagatggaactgtcgccaccctaggccagctggaccgggaggagctgtgtcga
ggctcggacctgtgtgagctggccttcagtgttctctacaggaaaggtggtgttatccac
ttcctgagggtgcgggtggaggtgatggacctaaatgaccacagcccaactttccccagc
agccagcaggaggtggaaatctctgagatggccacattgaggatgcggatccccctggac
cgagcggtggacccagacgccggccccaatggtctgcagacctactcgctgtccgtcaac
cagcattttgccctggatgtaaggagcgctgtggatgggccaaagcaggcagagctggtg
gtgatcaaggagctggacagggaggtgcattcctccttcgagctgactctggtggcctgg
gacaaggggaatcctcccaggtcgggcagtactctggtccaggtcaacgtcttggactct
aatgacaacagccccatgtttgaggatagcacccccactgtggaactagctgaggataca
gctcgtgggactagcgtcatcaacctcaaggccacggaccctgaccaaggggccaacggg
gaggttgagtactctctaagcaagcatgcgccacctgaggtgcagaagcttttcagtatc
cacccccagagtggggtagtgactttaaaaggccaactggactatgaagccaaacacttt
tatgaggtggacatccaggcgcgtgatcttgggcccaacgccatcccctctcattgtaaa
ctacacatcaagctaagggatgtcaatgataatgcaccaaggatccacgtcacttggaca
ccccctgattccccagtggcaactgttttagaaggtgcaccagaggacacgttccttgca
ctggtgatggtctctgatgcagactccggggacaacgggaatgtgcacgcccacatccag
catggatccggccacttccgcctcaagaaaatccatggcgacaattacatgatcgtaacc
aatggcaccctggatcgggaaaaggtcatggagtataatctcacgttacttgcccaggat
tacggtgaccctccactgtcatgtgttagacacctagttgtccatgtgttggatgagaat
gacaatgcccctgtgttctccaagtcccactacagggcttccttcaaggagaacaatacc
gtggggctccaggtcctcaaggtagaggccaatgatgtggatattgagctcagcggcagg
gtgtcgttctccatccgagagtccaatgagctgggacctcccacggcgtctttcgccatc
caccccaccagtggtgtagtcagcgcccagcagtcattggactatgaggagtcgcccaca
tactccttcattgtggaggccatagaccatgggcatccacccctcaccagcaccgccacg
gtactcatcgagatccaggatgtcaacgacaactaccctgtcatcaaggagccgatgcca
aagaaaggcatagcctttgtgagtgtcccggtcaacgaggagaagggggagatagtgaca
caactaggggatggtgctgaagaaggctccaccgatcctcatactggtcgctctgtccaa
aatggatttatgggattcctggccactaccatcaaggctaatgatccagactctggcctg
aatggaagactcagctacatgatcacagatggaaaccccacaggactattcagactcaat
gacaccactggacaactgtatgttaacacgaccaatgctacagagctcattgggaaaact
ttcaaagtggatattgctgtatcggacaagggttctccaaggctattgacaaagttcacc
ttggaggtggctttcatcaacttgcgggaccatttgaagaactcagcccctggtaaccat
ggtcagctgagtttcaccatgatggtggccatctgccttggggccagctgcatcctgctt
ctcctgacggttgccttggtgaccaccttctgtcgccccacgaaacgagacaaccattcc
tacaactgcaggactgccgagtccacctacacgagccaccctcgccgccctcagaaaaac
atcaggaagacagacatccagctggtgccagtcctgaggggacgaagggaggaccctcca
gaagatgacgaatcccagcccctctcccctatgctcctggtggttgaagagcaaaacacc
gaaacacagtacagcgttgccaactccatgaacccaacagtccactcccaggcctaccca
gaggggggatcaacgctaccagtctcccattccagaacactcaggaaacctgggagcatc
gagctggacggcactcttccttggacccctgccattccttaccgaaccctgcgtaaggca
agaaacccttcatcgtcctcctcactgaatcagaccagtaccctgagacgacatgggaac
tctgagatccaggttagccccgacgttgaagtgccagaaacatcgtcccaggtgacaaca
cttagaaggcccaagaacacagataccagaagtggacttgacgctgaagaccacagacgg
atgctgaggaacctggtccgtctctccatggctgccttcggagagaactccattgagttg
tctgctgcctctcccgaagtgcagcaggtttctcagctcctctccctgctccaccagggc
cagctgcagccaagaccaaacttccgaggcaacaagttctcccagcgtgctggcaggtct
tacgctcaggacactgattggcagagcaccaaggacagcggtcatggtgagagtgaggcc
ggagacatggactgggacatgggccgagactccccagtcgacccgctactggaggagggg
cttaataacctgctcaacaaccctgatgacgtctttgctgacatagaggaccctgcgtgg
atgtcccgcctctccctccccctaacggccgactaccacgagaatgtttttgttcccaat
gggccaccgtcccctgaaacccattgctccccagacacccttgactctgcctccttctcc
acctttggtaagaagccggaggatggctcactgggcggggccttgatctcagaggtcaac
actttgtttaatatgctcctgacccagaaaggcgactcccagccccgcccctcgccagac
gtgctctacagactgtccgccacctaccggcgctcgctggggctggaaggagataccgcc
gcagcagggagcgccaacatacaaaggaactctgtgaaccccgaaaagaggtcccccctg
gctcaatgcccttag
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