Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391183
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Entry
139391183 CDS
T10872
Name
(RefSeq) protocadherin-18-like isoform X1
KO
K16499
protocadherin delta 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139391183
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139391183
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
TMEM154
Motif
Other DBs
NCBI-GeneID:
139391183
NCBI-ProteinID:
XP_070994866
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Position
31:31030012..31036690
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AA seq
1242 aa
AA seq
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MGAKMNTPRGNLVFSTALLLFLVGIMQEVNGKNLKYKVYEEQKVGTVIARLKEDVAGVLS
KLPSSVSFLFRAMQRGSTPFLSVREEDGEITIGTKIDREKICEKNLNCSIEFDVITLPTE
YLQLFHVEVEVLDINDNSPQFSRAIIPIEISESASVGNRIQLDSATDPDVGDNSLYSYSL
TPNHFFKIDIRTRTDGAKYAELVVVRELDREVQSNYQLQLTASDNGVPPKSGSTLLKISI
SDSNDNSPAFDEQAYVINLMENSPLGTLLIDLNATDPDEGTNGKIVYSFSSHVSPKILET
FKINPENGQITLIKKVDYESTSSYELDIQAQDLGPNSIPGLCKIVIKVVDVNDNKPEINI
NLMTPGKEEVAYISEGAPVDTFIALVRVDDSDTGLNGDVVCRLHGHGHFRLQKTYEKNYM
ILTNVSLDREKRSEYSLTVIAEDRGSPSLSTVKHFTVQVLDENDNPPRFEKSRYEVFKSE
NNSPGAYLMTVVASDPDLGTNGQVTYTVVEALVQGSPISTYVTIDPSNGAIYALRSFDHE
DVSRIAFTVQARDGGNPALSSNATVLLTVLDDNDNPPTIQSPPLRNHTADLPLWRHASAG
QLVTIIKATDRDTGANGELSCSIVGGNEEGLFVMDARRCELRTNGSLEGVPKDVLEIRVE
VQDRGTTRLSTGALLRLSLQENMDILPPGLPTGPSQPPLDLSLIIIISLGAVCALLLVVM
VMFTTARCNREKKDPRNSYNCRVAENTYQNHPKKPSRQIHKGDITLVPTVNGTLPVRAHP
RSPSASPAPERGTMGSRQSQHSRQSLNSLVTISSNHVAENFALELAHATPPVEQVSQLLS
MLHQGQYQPRPSFRGNKYTRSYRYALNDMDKFSLKDSGRGDSDAGDSDYEAGRESPIDRL
LGEAFTELYPPDGQHRPHPQHPHAAMRLCTEECRVLGHSDQCWMPPLPSPASSDYRSNLF
IPGDDPRQARDPEQPPQSSDPTNPHAQRSNQSFSTFGKDNQEGAEEGEAEDGGEDGEDLC
GTTSLLSEMSSVFQRLLPPSLDSYVQVSETQKGGASVGGVSIPMTGSLDRRRSHLPGKPS
AAAHQQGVAAWAANTHFQNPGSSIGPSGHPHPQNGSYHTLKPSTKLNPQNNHKNQVVGHG
QHAPTPKNSPLLTALVSPTLVVPSLAPAPAPIPVPVPLPGPCGKWLPAMEEIPENFEEDE
FDSVLGQLGHLQGKRSDSRHELMDASELVAEINKLLQDVRQS
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgggtgccaaaatgaatacacccagagggaatctagtattttccactgcgctattatta
tttttggttggaattatgcaggaagttaatggtaagaatttgaaatataaagtttatgaa
gagcaaaaagtgggcacagtgattgcaaggctaaaggaagacgtggcgggtgttctttct
aaattaccgagttcagtgtcctttctgttccgtgctatgcagcgggggagcactccgttt
ctgtcggttcgggaggaggacggtgaaatcaccatagggaccaagattgaccgggagaag
atttgtgaaaagaacctcaactgttccatcgaatttgacgttatcaccctgcctactgaa
tacctccagctcttccacgtcgaggtggaagtcttggacattaacgataactcgccacag
ttctctcgtgccatcatacccattgagatctccgagagcgcatctgttggaaaccggatc
cagctggacagcgccacggacccagacgtgggagataactccctttactcttattccctg
acaccaaatcactttttcaaaatcgacattaggaccagaaccgatggtgccaaatacgca
gagcttgttgtggtgagagagctggacagggaggtgcagtccaactaccagttgcagcta
acggcctcggacaatggagtccccccgaagtccggctccactttgctcaagataagcatc
tcggactctaatgacaacagtccggcttttgacgagcaggcttacgttattaatctcatg
gaaaactcaccactagggactctactgattgatttaaacgccacagatccggatgagggc
acaaacggtaaaatagtttactctttcagcagtcatgtctctcccaaaatactggagacg
tttaaaattaaccctgaaaatggtcaaatcactttgattaaaaaagtggactatgaatct
acatcatcttatgagctggacattcaggcacaggatctgggtcccaactccatccctgga
ctttgtaaaatcgtaatcaaagtggtggacgtgaacgacaacaaaccggagatcaacatt
aacctgatgactcctggcaaggaggaggtggcctacatctcggagggcgcgccagtggac
acctttatagcactggtgcgcgtggacgacagtgacacggggctcaacggtgacgtggtg
tgccgtctgcacggccacggtcacttccggctgcagaagacctatgagaagaattacatg
atcctgaccaacgtgtctttggacagagagaagaggtcagagtacagtctgacagtcata
gctgaggaccgtggctctccaagcctctccacagtcaaacacttcactgtacaggtgttg
gatgaaaacgataacccgcctcgctttgagaagagtcgctacgaggtcttcaagtcagag
aacaactctccaggggcctacctgatgacagtggtggcgtccgaccctgacctgggcact
aacggtcaggtgacctacacggtggtggaagctctggtccagggaagccccatatccacc
tacgtcaccatcgacccgtccaacggcgccatctacgctctacggagctttgaccacgag
gacgtcagccgcatcgccttcaccgtccaggcccgtgatggagggaaccccgccctctcc
tccaatgccaccgtcctcctgaccgtgctcgacgataacgacaatccgcccaccatccag
tccccacccctacggaaccacaccgcggatctacctctctggagacacgcctccgccggt
cagctggtcaccatcattaaggccaccgaccgcgacaccggtgccaatggcgagctgagc
tgctccattgtcgggggcaacgaggagggcctgtttgtgatggacgcgcggcgatgcgag
ctgcggaccaatggcagtctggaaggggttcccaaggacgtgctggagatcagggtggag
gtgcaggacaggggcaccactcgcctgtccacaggggccctgctccgcctttccctccag
gagaacatggacatcctgcccccaggcctccccacgggcccaagccagccaccgctggac
ctctccctcataatcatcatctccctgggggccgtgtgtgccctgctgctggtggtcatg
gtgatgttcaccacggcacgctgcaacagggagaagaaggacccacgcaactcgtacaac
tgcagggtggcagagaacacgtaccaaaaccacccgaagaagccctctaggcagatccac
aagggagacatcaccctggttcccaccgtcaacggcaccctgcctgtacgggcacaccca
cgctcaccttctgcttcgcctgccccagagaggggcaccatgggcagccggcagagccaa
cacagccgccagtcgcttaacagcctagtcaccatctcctccaatcacgtcgcagagaac
tttgctctggaactggcccacgccacgccccctgtcgagcaagtctcacagcttctgtcc
atgctccatcagggccagtaccagccaagacccagtttccgtggcaacaaatacactagg
agctacaggtatgctctaaatgacatggataagtttagtctgaaggacagtggtcgtggt
gacagcgacgctggggacagtgactacgaggcagggagagaatctcccatcgacaggctc
ctgggtgaggcctttactgagctatacccccctgacggccaacacagaccccatccacag
catccgcatgcagcgatgagactgtgcactgaggagtgtcgtgtcctgggtcattctgac
cagtgctggatgcctcccttgccctccccagcctcctctgactaccgcagcaacctcttc
atcccaggagatgacccccgccaggccagagaccccgagcagcctccacagtcctccgac
cccacaaaccctcatgcccaacgcagcaaccagagcttctccacctttggcaaggacaac
caggagggggccgaggagggagaggcggaagatgggggagaggatggggaggacctctgt
ggaaccacctccctgctgtcagagatgagcagcgtgttccagaggctcctccccccgtcg
ctggactcctacgtccaggtcagtgagacccagaagggaggtgcgagtgtggggggtgta
agtatcccaatgacggggtcactggacaggaggaggagtcacttgccaggtaagcccagt
gctgcagcccaccagcaaggtgtggcagcgtgggctgccaacacccatttccaaaacccc
ggatctagcatcgggccctcaggccatccacacccccagaacggcagctaccacaccctc
aaacccagcaccaagctcaacccccagaacaaccacaagaaccaggttgttgggcacgga
cagcacgcccccacccccaagaacagccctctcctcactgccctggttagccctaccctg
gtggtaccctccctggcccctgcccctgcccccatccctgtccctgtccccctcccgggg
ccttgcggtaagtggctcccagccatggaggagatcccagagaactttgaggaggatgag
tttgactcggtgctggggcagctgggacacctgcaggggaagaggagcgacagccgccat
gagttgatggacgccagcgagctagtggctgagatcaacaaactgttacaggacgtccgg
cagagctag
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