Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391647
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Entry
139391647 CDS
T10872
Name
(RefSeq) retinoic acid receptor RXR-beta-A-like isoform X1
KO
K08525
retinoid X receptor beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03320
PPAR signaling pathway
ocla04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
139391647
03320 PPAR signaling pathway
139391647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139391647
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139391647
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
139391647
Nuclear receptors [BR:
ocla03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
139391647
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
139391647
NCBI-ProteinID:
XP_070995139
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Position
32:31981261..32015086
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AA seq
471 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGLHSPPLTPTAAAMTSLPPFTSDVNSPTSSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPFGLGGHSPGGPMLSQK
RLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRY
QKCLACGMKREVVQDERQRSVQEERQRNKERESEAESTSAVNEEMPVEKILEAEMAVEQK
TEVHADGTSEGSSVNPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDDQVILLRAGW
NELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLT
ELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSSSEVELLREKVYASLESYCKQRYPDQ
QGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagcagagattcccgcagcccagacagctcatctgtgtcctcccctccctcg
ggcctgcactcaccccccctgacccccacagctgccgccatgacgtctctgccgcccttc
acctcggacgtcaacagccccaccagcagcatgggctcgcccttctctgtcatcagctcc
tctttggggtcgccatgcctgcccgggacaccctcggtgggctacggccccattagcagc
ccccagatcaactccacagtgtccatgtcgggactgcacgcggtcagcagctcggacgac
gtgaagcctccgttcgggctggggggccacagcccagggggccccatgctctcccagaag
cgcctgtgtgccatctgcggcgaccgctcctccggtaagcactacggagtgtacagctgc
gaaggctgcaagggtttcttcaagcgcacggtgcgcaaggacctgagctacacctgccgg
gacaacaaggactgcctggtggacaagcgccagcgcaaccgctgccagtactgccgctac
cagaagtgcctggcctgtggcatgaagagggaagtggtccaagatgaacgacagagatcc
gtgcaggaagagcgccagaggaacaaggagcgggagagtgaggcggagtcgaccagcgcc
gtcaacgaggagatgcccgtggaaaagatcctggaggccgagatggccgtggagcagaag
accgaggtgcatgccgacgggacctccgagggcagctcggtaaatcccaatgacccggtc
accaacatttgccaggctgcagacaagcagctgtttaccctggtggagtgggccaagagg
gtcccccacttctctgagctggccctggacgaccaggtcatcctgctacgcgccggttgg
aacgagctgctgattgcctccttctctcaccgctccatcagcgtgaaagatggcatccta
ctggccaccggcctgcatgtgcacaggaacagcgcccacagcgctggcgttggagccatc
ttcgacagggagagtgcgcacaatgcagaggttggggccatatttgacagagttctcact
gagctagtcagtaagatgagagacatgcagatggacaagaccgagctcgggtgcctccga
gccatcatcctcttcaacccggatgccaagggcctgtccagctccagtgaagtggaattg
ctaagggagaaggtgtacgcatcgctggagtcctattgtaaacagagataccccgaccag
cagggcaggttcgctaagctcctcctccggctgccagcgctacgctccattggcctgaag
tgcctggagcacctgttcttcttcaagctgattggtgacacccctatcgacacattcctc
atggagatgctggaggcgccccaccagctgacctag
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